Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03972 ATGATGGAGGAAGAAGAGAATATTCATGAAGGATATAAAGGAAAAAATGTTGCAATTAGTAGCATGAGTTGTTTAGAGACATCAAGGAAGAAAAACAAGAAGGTAGAAAATAAGAGAAGGTTTAGTGATGAACAAATAAGATCACTAGAATGTATATTTGAGTCAGAATCAAAGTTGGAACCAAGGAAGAAGATTCAACTTGCAAGAGATCTTGGTTTGCAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGAGCTAGGTGGAAATCTAAAAGGATTGAACAAGAATATCGAAAACTCAAAGATGAATATGATAATTTATCTTCTAAGTTTCAGTTACTTAAAGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCTCATGATTGTGGTGGAAGGGAAGCTAAGGAACATAGCACAGAAGATGGTGGTTCAGGAAATGGATACAGCAATTGCAGGGTTGAAACAAAGAAAAGGTTTTCAAATGAGGGTTTAGAGGATAGAATGGTAATTTACTCAGATGATCAAAATGAAAGAAGCACTACAAGGATTGAAGACAGAGGAAATCAAGTTTTGAGAAATGATGATCATGAAGAAATTCCATTGACAACACTTGAAAAATGGTACAATGTTGATCCAAGTAGTATATTAGACCAATCATGTAACAGTTCTCAATGGTTGGATTTTTGGACTTGA 723 0.3416 MMEEEENIHEGYKGKNVAISSMSCLETSRKKNKKVENKRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLSSKFQLLKEEKESLQSEVQKLSYMVETSHDCGGREAKEHSTEDGGSGNGYSNCRVETKKRFSNEGLEDRMVIYSDDQNERSTTRIEDRGNQVLRNDDHEEIPLTTLEKWYNVDPSSILDQSCNSSQWLDFWT 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03972 240 FunFam Homeobox-leucine zipper protein ATHB-7 19 92 - -
Trre5g03972 240 Gene3D - 18 98 - -
Trre5g03972 240 SMART HOX_1 35 96 IPR001356 GO:0003677
Trre5g03972 240 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Trre5g03972 240 CDD homeodomain 38 93 IPR001356 GO:0003677
Trre5g03972 240 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Trre5g03972 240 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Trre5g03972 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 175 IPR045224 GO:0003700
Trre5g03972 240 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Trre5g03972 240 Pfam Homeobox associated leucine zipper 92 132 IPR003106 GO:0006355|GO:0043565
Trre5g03972 240 Coils Coil 84 132 - -
Trre5g03972 240 SUPERFAMILY Homeodomain-like 23 92 IPR009057 -
Trre5g03972 240 MobiDBLite consensus disorder prediction 141 161 - -
Trre5g03972 240 Pfam Homeodomain 37 90 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03972 Trre-Chr5 40883066 40884023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03972 12 240 Homeobox Transcription Factor Family AT2G46680 38.400 3.12e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre5g03972 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03972 K09338 - gmx:100499926 324.324