Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03945 ATGAAGGGTTCATCCGATACGAAGTTCCTTCAAGATATTTTGTTATACGCTGCAAGCGCTGCGTTGAGTTGCTTGGTATTGGTAACCGGGTTGCAATACTTAGACCCGAACCGTGAATCTTCCAAGAAGGCTCTTGAACATAAGAAAGAGATTGCAAAGCGTTTAGGTCGTCCCCTTATTAATACAAATTCTTATGAGGATGTAATAGCCTGTGATGTAATAAATCCTGACCACATCGACGTGGAGTTTGACTCCATTGGGGGACTGGCAACCATTAAAGAAGCGTTATTTGAGCTTGTTATTCTTCCCCTGAAGCGACCTGACTTGTTTTCGTATGGCAAACTTCTTGGACCTCAAAAGGGAGTCCTGTTGTATGGACCCCCTGGCACTGGGAAAACCATGCTTGCCAAAGCTATTGCCAAAGAGTCAGGAGCAGTTTTCATTAATGTGAGGATATCCAACCTGATGAGTAAATGGTTCGGAGATGCTCAAAAGCTTGTGACTGCTGTATTTAGCTTGGCTCATAAACTTCAGCCTGCCATCATCTTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGTCGTCAATCAGATCATGAGGCTTTGTTAAACATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCACTACTGACCAGAATGCCCGAGTTATGGTACTTGCGGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTTTTCCTCAAGCCTTTGAAATTGGAATGCCAAACCAGAAGGAGAGGGCTGAGATATTGAAGATCATCTTAAAGGATGAGAGGGTTGAAGATAACATAGACTTTGGTTCTATAGCTAGATCATGTAAGGGTTACACCGGATCAGATCTATTTGACCTTTGCAAAAAGGCCGCCTATTTTCCTATTAGAGAACTGCTGGATTACGAGAAGAAAGGGAAACAATCACCTGAACCTAGACCTTTGTCGCAGTTAGATTTGGAGAAGGCCCTTTCCACTTCACGGAAGACAACGGTTGCTGCAAATGAATACAGCAGAATGAGCCAACCGTCATCATCCGGTGATTCAGAGTAA 1077 0.4336 MKGSSDTKFLQDILLYAASAALSCLVLVTGLQYLDPNRESSKKALEHKKEIAKRLGRPLINTNSYEDVIACDVINPDHIDVEFDSIGGLATIKEALFELVILPLKRPDLFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVTAVFSLAHKLQPAIIFIDEVDSFLGQRRQSDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRFPQAFEIGMPNQKERAEILKIILKDERVEDNIDFGSIARSCKGYTGSDLFDLCKKAAYFPIRELLDYEKKGKQSPEPRPLSQLDLEKALSTSRKTTVAANEYSRMSQPSSSGDSE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03945 358 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Trre5g03945 358 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Trre5g03945 358 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 14 350 - -
Trre5g03945 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Trre5g03945 358 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Trre5g03945 358 SMART AAA_5 118 258 IPR003593 GO:0016887
Trre5g03945 358 MobiDBLite consensus disorder prediction 335 358 - -
Trre5g03945 358 Gene3D - 253 333 - -
Trre5g03945 358 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Trre5g03945 358 CDD RecA-like_ATAD1 85 250 - -
Trre5g03945 358 Gene3D - 80 339 IPR027417 -
Trre5g03945 358 Pfam AAA+ lid domain 274 309 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03945 Trre-Chr5 40688755 40694945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03945 39 325 Calmodulin-binding Proteins AT3G56690 31.507 6.33e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03945 K22530 - gmx:100796908 603.208