Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03944 ATGGGAAGTTCATCAGATACGAAGGTTCTACAGGATTTTTTGTTATACGCGGCTAGGGCAGCGTTGAGTTACTGGGTATTGATACAGGGGCTCCGATATCTAGACCCGAACCGTGAATCATCGAAGAAGGCTCTTGAGCAGAAGAAAGAGATTGCAAAGCGTCTAGGTCGTCCTCTTATTCAAACCAATTCTTATGAGGATGTGATAGCATGTGATGTTATAAATCCTGATCACATTAATGTGGAATTTGACTCCATTGGAGGATTGGAAAGTATTAAACAAGCTTTGTTTGAGCTTGTTATTCTACCCCTTAAGCGGCCCGACTTGTTTTCGCATGGCAAGCTTCTTGGACCACAAAAGGGGGTCTTGTTGTATGGACCTCCTGGCACTGGGAAAACTATGCTTGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTATTTATTAATGTCAAGATATCTAACCTCATGAGCAAATGGTTCGGGGATGCCCAAAAGCTTGTGGCTGCCGTATTTAGCTTGGCCGATAAGCTTCAGCCTGCCATCATATTCATTGACGAAGTAGACAGTTTTTTGGGTCAACGTCGTACATCAGATCACGAGGCTATGTTAAACATGAAAACGGAGTTCATGGCTCTATGGGATGGATTCACCACCAACAAGAATGCTCAAGTTATGGTGCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTCAGGCGGCTTCCTCAAGCTTTTGAAATTGGATATCCAGACCAGAAAGAGAGGGCTGAGATATTGAAGGTTATCTTAAAGGGCGAGAGGGTTGAAGATAACATAGACTTCGGTTATATAGCGGGATTATGCAAGGGTTACACTGGTTCAGATATATTTGATCTTTGCAAGAAGGCTGCGTATTTTCCTATTAGGGAACTACTGGACGATGAGAAGAAAGGGAAACAATCTTGTGAACCTAGACCTTTGTCACAGTTAGATTTGGAGAAGGCCCTTTCCACTTCACGGAAGACAATGGTTGCTGCAAATGAATACAGTAGAACAAAAGCACAGTCATCTTCAAGACAGCCATTTTCTGGTGAGTCAGGTGATTATGAGGTTCAAGCTGCAATCAAGGAAATTTCTAGGCTTATGGGTTCTCACATGATTAACATCCAATTAGAACCCCAGGATCCTTAA 1179 0.4292 MGSSSDTKVLQDFLLYAARAALSYWVLIQGLRYLDPNRESSKKALEQKKEIAKRLGRPLIQTNSYEDVIACDVINPDHINVEFDSIGGLESIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVKISNLMSKWFGDAQKLVAAVFSLADKLQPAIIFIDEVDSFLGQRRTSDHEAMLNMKTEFMALWDGFTTNKNAQVMVLAATNRPSELDEAILRRLPQAFEIGYPDQKERAEILKVILKGERVEDNIDFGYIAGLCKGYTGSDIFDLCKKAAYFPIRELLDDEKKGKQSCEPRPLSQLDLEKALSTSRKTMVAANEYSRTKAQSSSRQPFSGESGDYEVQAAIKEISRLMGSHMINIQLEPQDP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03944 392 Pfam AAA+ lid domain 274 309 IPR041569 -
Trre5g03944 392 SMART AAA_5 118 254 IPR003593 GO:0016887
Trre5g03944 392 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Trre5g03944 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 309 IPR027417 -
Trre5g03944 392 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Trre5g03944 392 MobiDBLite consensus disorder prediction 343 361 - -
Trre5g03944 392 MobiDBLite consensus disorder prediction 343 363 - -
Trre5g03944 392 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 29 344 - -
Trre5g03944 392 CDD RecA-like_ATAD1 85 250 - -
Trre5g03944 392 Gene3D - 253 333 - -
Trre5g03944 392 Gene3D - 80 340 IPR027417 -
Trre5g03944 392 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03944 Trre-Chr5 40680136 40685062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03944 81 312 Calmodulin-binding Proteins AT3G56690 35.294 2.12e-38 145