Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03924 ATGGACACAGCTCAGTGGGCACAGGGTAATATTGGATTGGTTAAACAAATGGATCATGGATCAGCTTCAAATTCAAAACCACCACCATCTTTGATAGAAAGAAGAGCAAGACCACAAAAAGATCAAGCTATAAACTGTCCAAGGTGCAATTCAACAAACACAAAATTTTGTTACTACAACAATTATAGTCTCACTCAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGTTCTTTAAGAAATGTACCAGTTGGTGGTGGTTCAAGAAAAAACAAAAGATCAACATCATCATCATCATCACCTTCAATTTCATCATCACAATCACAACCTCAACCTCCTTCATCATCATTAACAAAAAATATTATCATTAATCATAATCATAATCCTGATCTGACTACTACTACTACTACTGCTAATACTAATACTACACATAATCATAATTTTCTACAATCTGCTTCTCAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACAAACAACTGAGGATAGTTATAATACTATATCTAAATTTATTGAACTTCCTTATAGTACTGAACAGGATAAAACAACAAGTGCTATGGAGCTTTTGAAAACTGCTTCTTCATCTAGGGGTTTGAATTCATTTATGCCTATGAGTTTATCTGAAGGTAGTGCAATGTATAATTCAAGTGGTTTTGCTATGCAAGATTTTAAGCTTGGTGTTAATTTTGGTTTACAAGGTTTTGAGAATGGTTATGGTGGTTTACAAGGGATTAATCAAGAAGGTTCTGGTGGTGGTGTTGGCGGTGGTGGCGGCGGCGGTGCAAGGATGTTGTTTCCTGTTGTGGAAGATCAGTTGAATAAGCAGCAACAAGTTCCAAATAGTGGTGGTGAGTTTGATCATCATCATCATCAACAACAGAATAATAGAAATCAAGGTGATTCAACTGGTTATTGGAATGGTATGTTAGGTGGTGGATCATGGTAG 999 0.3624 MDTAQWAQGNIGLVKQMDHGSASNSKPPPSLIERRARPQKDQAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSSSSSPSISSSQSQPQPPSSSLTKNIIINHNHNPDLTTTTTTANTNTTHNHNFLQSASQNPKIHQGQDLNLAYPPQTTEDSYNTISKFIELPYSTEQDKTTSAMELLKTASSSRGLNSFMPMSLSEGSAMYNSSGFAMQDFKLGVNFGLQGFENGYGGLQGINQEGSGGGVGGGGGGGARMLFPVVEDQLNKQQQVPNSGGEFDHHHHQQQNNRNQGDSTGYWNGMLGGGSW 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03924 332 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Trre5g03924 332 MobiDBLite consensus disorder prediction 82 153 - -
Trre5g03924 332 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Trre5g03924 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 208 IPR045174 GO:0003700|GO:0006355
Trre5g03924 332 MobiDBLite consensus disorder prediction 292 332 - -
Trre5g03924 332 MobiDBLite consensus disorder prediction 1 39 - -
Trre5g03924 332 MobiDBLite consensus disorder prediction 93 153 - -
Trre5g03924 332 Pfam Dof domain, zinc finger 41 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03924 Trre-Chr5 40450943 40452371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03924 34 332 C2C2-Dof Transcription Factor Family AT3G61850 37.658 3.10e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre5g03924 zf-Dof 3.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03924 - - tpra:123909226 501.13