Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03900 ATGGATTTCTTTGCAAAACCTGAAACCTCCAACTTGTTTTGTAATGCTCAATATCCACTAAACGACACAGACAAAATCATGGATATTTCACCATATGATGATTTCTTACACATTAATTGGGCAACTCAGTTATCATACCAAAGTAACAAACTTTTACCCAATGAGTTCAATGATGTTGAAAATATCAACTTTAATTTCAACCTTCCAAACCTTTATGAAAATCTTGAGATAGAACAAAAACCCACCAATGTTGTTTTGCCTGAAATGCTGCATAATAATGAAAAAGGTAAAAATGTTTGTGAGAGTGCTTTTTCTGAAGTGTCAGAGGAAGTTGGAAATGGGTTTATGAGTTTTGTGAAGAAAGAGATGAAATGGGTGGATCAAGATATGCCATTTGGAGAAAATCATTTTTCTGCTGCTGAGATTGGTTTTGTTGAAACTTCTGCAAAACACAAAAATGAGTTTGTGAACTTTGTGAAGAAAGAGATGAAATGGGTCGATCAAGATATGTCATTTGGACTTGGAGGAAATCATTTTTCTGCTGCTGAGATTGGTTTTGTTGAAACTTCTGCAAAATATAGAAATGAGTTTGTGAACTTTGTGAAGAAAGAAAATAAAGTGGAAAATCAAGGGTTTCCAAAATCATTGACATTTGCTAGAAGTAGTGTCATTAGGAAAAAGAAGAAGTCATGTTCACTGCAATTTGATGAGATTAAGGAACATTTTGATGTTCCTATAACAATGGCTGCTAAGAAAATGAATGTTGGAGTGACCCTTTTGAAGAAAAGATGTAGGGAACTCAATATCAATAGGTGGCCTCATAGAAAATTGAAGAGCTTGATGTTACTCATTGAACACCTTAAGGAAATGGGTTTGGAAAATGAGGTTGCAAAGTTGGAGAAGCAAAAAAAGATGTTGGAGAAAATTCCAGGAATGGAATTGAATGAAGAAATCAAGAAGCTAAGGCAATCATGTTTTAAGGCTAATTACAAGAAGAGAAGATCAAGTGCTTTCCATCATTGA 1023 0.3412 MDFFAKPETSNLFCNAQYPLNDTDKIMDISPYDDFLHINWATQLSYQSNKLLPNEFNDVENINFNFNLPNLYENLEIEQKPTNVVLPEMLHNNEKGKNVCESAFSEVSEEVGNGFMSFVKKEMKWVDQDMPFGENHFSAAEIGFVETSAKHKNEFVNFVKKEMKWVDQDMSFGLGGNHFSAAEIGFVETSAKYRNEFVNFVKKENKVENQGFPKSLTFARSSVIRKKKKSCSLQFDEIKEHFDVPITMAAKKMNVGVTLLKKRCRELNINRWPHRKLKSLMLLIEHLKEMGLENEVAKLEKQKKMLEKIPGMELNEEIKKLRQSCFKANYKKRRSSAFHH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03900 340 Coils Coil 289 309 - -
Trre5g03900 340 Pfam RWP-RK domain 233 280 IPR003035 -
Trre5g03900 340 ProSiteProfiles RWP-RK domain profile. 219 301 IPR003035 -
Trre5g03900 340 PANTHER PROTEIN RKD4 183 336 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03900 Trre-Chr5 40110213 40111818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03900 233 335 AtRKD Transcription Factor Family AT5G53040 60.194 5.90e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre5g03900 RWP-RK 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03900 - - gmx:102667519 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03900 5 40110213 40111818 Trre5g03900 5 40110213 40111818 ECH