Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03892 ATGTCTCGCAGCTCTCAAACATGCAACCATGGAAGAGAACACAGCATTACAATATTCGGTGTTCAACTCACCGGAAGAACTAATGACGACGACAACAACAACAACATCCAACACTCTGAATACCAACAACCTCTGCCTCAAGTTTCCACTTCCACTGGTACCAGTTATGTCTCCGACAATATCGCTCATGCCTCGGACCAATCCCGCAAATGCAAACGAGGTGTTCCTTGGACGGAAGAAGAACATATGTTGTTCTTGAAAGGGTTGAAAGAGATTCGTAAGGGTGACTGGAAAACAATTTCTAGCAACTTTGTTAAAACTAGGACTGCAACTCAGGTTGCAAGTCATGCTCAGAAGCATTTTCTCCACCATCCTAACCCGAACCGCCGCCGCAGGAAACCTAGTGTCTTTGATCTTACCATTGATAAGGTGATAAAATCTTCAACTATTATGGAAAATGAGCAGATTCGGCAAGAAAATGTGGTGCTCCTACCTCCACCAACCCCCACCGCATATCCATCCACACACAATGGCGAAACTCCCAATGGCCCTTTACCGATCAGTCTTGGTCCAATAGCATTACCGGTGCGGCCTCTTTCTTGGTTCGACTTGAATGACAATGAATCTTCTTCTTCTTCCACTAAGACTTTTCCATTGTCATTGAAGCTATAA 672 0.4464 MSRSSQTCNHGREHSITIFGVQLTGRTNDDDNNNNIQHSEYQQPLPQVSTSTGTSYVSDNIAHASDQSRKCKRGVPWTEEEHMLFLKGLKEIRKGDWKTISSNFVKTRTATQVASHAQKHFLHHPNPNRRRRKPSVFDLTIDKVIKSSTIMENEQIRQENVVLLPPPTPTAYPSTHNGETPNGPLPISLGPIALPVRPLSWFDLNDNESSSSSTKTFPLSLKL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03892 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 125 IPR017930 -
Trre5g03892 223 CDD SANT 76 121 IPR001005 -
Trre5g03892 223 MobiDBLite consensus disorder prediction 23 53 - -
Trre5g03892 223 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Trre5g03892 223 ProSiteProfiles SANT domain profile. 72 125 IPR017884 -
Trre5g03892 223 SMART sant 73 123 IPR001005 -
Trre5g03892 223 MobiDBLite consensus disorder prediction 204 223 - -
Trre5g03892 223 FunFam transcription factor MYB1R1 75 126 - -
Trre5g03892 223 MobiDBLite consensus disorder prediction 164 185 - -
Trre5g03892 223 Gene3D - 77 124 - -
Trre5g03892 223 ProSiteProfiles Myb-like domain profile. 76 121 IPR001005 -
Trre5g03892 223 NCBIfam myb-like DNA-binding domain, SHAQKYF class 72 123 IPR006447 GO:0003677
Trre5g03892 223 PANTHER TRANSCRIPTION FACTOR KUA1 4 170 - -
Trre5g03892 223 SUPERFAMILY Homeodomain-like 71 124 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03892 Trre-Chr5 39871163 39872766 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g03892 Myb_DNA-binding 5.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03892 - - tpra:123909419 216.853