Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03887 ATGACAATAATATCTCCAGCTCACCCACCCATGCATCATCATCACTATCACAATCACTCCCAATCCCCATCTCCATTAATATCAATATCCTCCTCCTCCTCATCATCAGGAGTAGACTTCACTCCACCACTAATAGCAATGGTTGTCGTCGTCGCCGCCGCATTCGTAATCGTAACATATTCCCGTCTCATAACTCGTCATTTATCCCCTCCTATCCACCGTCTAATCCAACGTTTCCACCGCCGTGATCCACCTTCCTCCTCCTCCTTAGGCGACATCGAATCACTTCAATACGATTCAACAACTTTCGAAACTCCACTCACTTACGGCTTAGACGAATCCGTTATAAAAACAATTCCATTCTTCATTTACACAACTAAATACGAACAAGAACAAGAATCTCTCCGTGACTGTGCCGTTTGTTTACTCGAATTCGAAGATCACGATTACGTTCGTACTCTTCCTCTTTGTTCTCACACTTTTCATCTCGATTGTATTGATGCTTGGCTTCGTTCACACGCTAACTGTCCTCTCTGTCGTTCACTTCTTCTCTGTGATTCTCCTTTTAGACCTCTTATGGCTGCGAGAATTCGTCCTTCTTTTCATGATCAAACTAATGTTCTTCATAATGATACTCCTTTTCATAACTCTGTTTCACCGGTTCCGGAGATTACTCCTCATTCTCCTGTTATGAGTACTGTTGATGAAAATCGGTTTACCGGACGGCAGGATTTTCTGTTGAAACGATCTTATTCGTTTGGATTTGAGAGGAGTTTGCCTTCGGAGAGGATGGTAATTGATCCTGCTACAACCTCGCCGTGGCGTTACCGGAGAGGAAGCACCGGTTTCTGGAACAAAAGACCGTCGCCGTTTGGCTCCCTTGGGAAGTCGAGAGTGTTTTCATTCAGGTATTACAGAGGAATGAAATCACCGTTCTTCCGACGGAGAGGATTTTTTCCGCTGTCGGAGTCGAGTAACAGGTACGCCGCCGACGGAGGAAGTTCATGGCGGAGGAGTAAGTCAATAGCGAGTCCGATGTTTTTAAGATCTTCAGCGGCGGTATTCTCGTCGAGTCGGCTGAGATGCGGTGATCCGGAGGCGTTACTTTCGCCGGAGAGATTTAACCGGCGACGATGA 1137 0.4609 MTIISPAHPPMHHHHYHNHSQSPSPLISISSSSSSSGVDFTPPLIAMVVVVAAAFVIVTYSRLITRHLSPPIHRLIQRFHRRDPPSSSSLGDIESLQYDSTTFETPLTYGLDESVIKTIPFFIYTTKYEQEQESLRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRSLLLCDSPFRPLMAARIRPSFHDQTNVLHNDTPFHNSVSPVPEITPHSPVMSTVDENRFTGRQDFLLKRSYSFGFERSLPSERMVIDPATTSPWRYRRGSTGFWNKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSNRYAADGGSSWRRSKSIASPMFLRSSAAVFSSSRLRCGDPEALLSPERFNRRR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03887 378 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Trre5g03887 378 FunFam RING-H2 finger protein ATL65 104 184 - -
Trre5g03887 378 PANTHER RING-H2 FINGER PROTEIN ATL16 22 195 IPR044600 GO:0016567|GO:0016740
Trre5g03887 378 Pfam Ring finger domain 137 180 IPR001841 -
Trre5g03887 378 CDD RING-H2_EL5-like 137 180 - -
Trre5g03887 378 SUPERFAMILY RING/U-box 119 191 - -
Trre5g03887 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 184 IPR013083 -
Trre5g03887 378 MobiDBLite consensus disorder prediction 1 30 - -
Trre5g03887 378 SMART ring_2 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03887 Trre-Chr5 39837415 39838551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03887 29 377 C3H Transcription Factor Family AT3G18930 50.000 1.90e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03887 - K19041 gmx:100806115 460.685