Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03877 ATGGATCCAAATTTCCACCCTCTGTTTTCCGGCGACACCTCTGATCCTCTGTTTTCCAACTTCAGTCTCCAATCACTTCTCACTTACAACAACCCTTCTTCCTTCTTCTCCGATAACACTCCTCCACTCCCTAACCTACCTGAAACCATCACCGACCAAACACTTTCAAACCTTAACAACAACAACAACAATGAAAATCTCTTCCTTGTTCCAAAAACAGAGCATCCTTTTAATAATCTTCCTCCATTAGACCAATTTCTTCCAATTCAACAACCCTTCAATTTCTTCCCTGACTTGTTTCCACCACCACCACCCTTTGATTCCTTTCACCGTCTCCCTCAACTCCTTTCTCATCATGAACATGAAAAACCCTCTAAGACAAAACGTCTCCGCTACCCTGCTGAAACAACCCCACCACCACCACCACCACAACAACAACAGCAACAACCTCACTCTGTTCGTGGAAAATCATCTACATTGATTCCTCAAAGTAAGTTAGCAAGACAGAGAAGACAGAAACTAAGTGAGAAAACTCGTTGTTTGCAGAAACTAATGCCATGGGATAAGAAAATGGATCAAGCTACCCTTTTAGAAGAAGCTTCAAAATATGTCAAGTTTTTGCAAGCACAGTACTCTGTTCTTCAATCAATGCCATCACACTCAACCACAAACAATAACTATGGTGGCGGTGGAAACGGTGGCAGAGCTGGTGGTGGTGTTTTTGGTGACTTGGAAATGCTGAACAGAAACCAAGCTTTACAGGTTATGGTGAACTCACCAGTTGCACAAACAAAACTCTGTTCACAAGGTTACTGTGTTTTCACCATGGAACAATTTTCTCTGCTCAGAAAGTTATCAGAGAGAAGACAATTGCAGCAGAAGAATTTGTCTTTTTCTGATCATGGTTCTTCAAAAAGTTTCTTTCACTGA 930 0.4161 MDPNFHPLFSGDTSDPLFSNFSLQSLLTYNNPSSFFSDNTPPLPNLPETITDQTLSNLNNNNNNENLFLVPKTEHPFNNLPPLDQFLPIQQPFNFFPDLFPPPPPFDSFHRLPQLLSHHEHEKPSKTKRLRYPAETTPPPPPPQQQQQQPHSVRGKSSTLIPQSKLARQRRQKLSEKTRCLQKLMPWDKKMDQATLLEEASKYVKFLQAQYSVLQSMPSHSTTNNNYGGGGNGGRAGGGVFGDLEMLNRNQALQVMVNSPVAQTKLCSQGYCVFTMEQFSLLRKLSERRQLQQKNLSFSDHGSSKSFFH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03877 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Trre5g03877 309 MobiDBLite consensus disorder prediction 148 168 - -
Trre5g03877 309 Gene3D - 162 226 IPR036638 GO:0046983
Trre5g03877 309 SMART finulus 164 213 IPR011598 GO:0046983
Trre5g03877 309 Pfam Helix-loop-helix DNA-binding domain 166 208 IPR011598 GO:0046983
Trre5g03877 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 217 IPR036638 GO:0046983
Trre5g03877 309 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 53 284 IPR045843 GO:0003700|GO:0006355
Trre5g03877 309 MobiDBLite consensus disorder prediction 119 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03877 Trre-Chr5 39707483 39708412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03877 109 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 36.517 1.35e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g03877 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03877 - - psat:127083335 322.398