Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03871 ATGGGTAAGAAAGGAAGCAGAAGCAGTTGGTTCTCATCGGTGAAGAAAGTATTCAAGTCTTCTTCTAAGGATTCGCCGGTGCCGGAGAACAAGAAGGAAAAGGAAGAGAATTGGCAGCATGAAGCAGCAGAGGAAGTATCTTTGGAACATTTTCCTGAATATAGTTCACCAGATATCACAAATGAAGGAAGTACCACATCAACACCAATGACTGAAGAAAGAAACCATGCTATTGCCTATGCAGTAGCAACAGCAGCAGCAGCTGAAGCTGCAGTGACAGCAGCTCAAGCAGCTGCTAGAGTTGTGAGATTGGCAGGTTATGGACGTAACTATAAGGAAGAAAAAGCAGCAATACTCATTCAATCATACTATAGAGGATACCTAGCTCGACGCGCACTGCGTGCATTGAAGGGATTGGTGAGGCTGCAAGCACTTGTGAGGGGACATAATGTGAGGAAGCAAGCACAAATGACAATGAGATGCATGCAAGCATTGGTAAGAGTACAGGGAAGAGTAAGAGCTAGAAGACTCCAATTGACTAATGAGAAACATCATAGGACATTGGAGGAACAGCATCCTGTGACAATGTTTGACACAAGTGGTTGGGACTATAGACGTCAAAGTAGCCACAAAATTAAGGAAAATGATTTCAGGAAATATGGAACTACAATGAATAAGGACAAACCTCTTCCTTACGCTTTCAACCACCAGCAACAACAGAAGCAATATTTGCATATAGATCCAAGCGTTGATGATATTGAAAGTTATGGCAATGAACGTGAAAGAGCTCAATTGGATTGGAATTGGTTGGAACGTTGGATGTTAACACAGTCACACAATGTTAGGCCTATAGGGTTGGGCCCACTTGAGACCCCACCATATACACCCACTGATGACATGTCTGAAGAAAAAACAGTTGAAATGGACATGGTTGCACCAAGAGACTCAATCCATGCAAACATAGGACAAATGAACCAAGAATTTCATGATTTAAGCCCAATTGCTAAACACCACCAAAGACATCATAGTGGAGGTGTACCTAGCTATATGGCCCCAACCCAATCTGCAAAGGCCAAGATTCGGAGTCATGGCCCATTAAAGCACCGGGCTTCATTTGGGTCTTATTGGAACTCATCATTAAGGAGTCCTCCAAGTGGGTTGGGCTATGAATCATCTGGCTCTGGTGGGGCCACTGCTGCTCATCCGATTACGAGAAGCCCAAGCCCAAAAATTAATGGGCTTCGTCTTCAATCGAAACGGATTACAGGTGTTAGCCCAGAAAAAGTTGGTGTTGAGGATTGGCCCAACCATCATGGAGCTCACGCTTGGGCTAGATTTGATTGA 1344 0.4405 MGKKGSRSSWFSSVKKVFKSSSKDSPVPENKKEKEENWQHEAAEEVSLEHFPEYSSPDITNEGSTTSTPMTEERNHAIAYAVATAAAAEAAVTAAQAAARVVRLAGYGRNYKEEKAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQGRVRARRLQLTNEKHHRTLEEQHPVTMFDTSGWDYRRQSSHKIKENDFRKYGTTMNKDKPLPYAFNHQQQQKQYLHIDPSVDDIESYGNERERAQLDWNWLERWMLTQSHNVRPIGLGPLETPPYTPTDDMSEEKTVEMDMVAPRDSIHANIGQMNQEFHDLSPIAKHHQRHHSGGVPSYMAPTQSAKAKIRSHGPLKHRASFGSYWNSSLRSPPSGLGYESSGSGGATAAHPITRSPSPKINGLRLQSKRITGVSPEKVGVEDWPNHHGAHAWARFD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03871 447 MobiDBLite consensus disorder prediction 1 69 - -
Trre5g03871 447 MobiDBLite consensus disorder prediction 383 413 - -
Trre5g03871 447 Pfam IQ calmodulin-binding motif 114 134 IPR000048 GO:0005515
Trre5g03871 447 Pfam IQ calmodulin-binding motif 140 155 IPR000048 GO:0005515
Trre5g03871 447 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Trre5g03871 447 PANTHER IQ-DOMAIN 5-RELATED 1 382 - -
Trre5g03871 447 MobiDBLite consensus disorder prediction 25 48 - -
Trre5g03871 447 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Trre5g03871 447 SMART iq_5 112 134 IPR000048 GO:0005515
Trre5g03871 447 SMART iq_5 135 156 IPR000048 GO:0005515
Trre5g03871 447 Gene3D - 110 165 - -
Trre5g03871 447 MobiDBLite consensus disorder prediction 383 401 - -
Trre5g03871 447 MobiDBLite consensus disorder prediction 1 24 - -
Trre5g03871 447 Pfam Protein of unknown function (DUF4005) 332 369 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03871 Trre-Chr5 39646680 39650896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03871 1 438 IQD Protein Family AT3G49260 46.042 3.30e-87 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03871 - - psat:127081873 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03871 5 39646680 39650896 Trre5g03871 5 39646680 39650896 ECH