Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03869 ATGCTCTGCCAAGCCACAGAACCCTTGTCGACCTTTTTAGAATATATCACATATGGTCACATGATAGACAATGTTGTTTTGATTGTTACTGGCACCTTGCATGAGAGAGATGTCCAAGAACTTCTAGAAAAATGCCACCCACTGGGCATGTTTGACAGTATTGCCACTCTGGCAGTTGCTCAGAATATGAGGGAGCTTTACAGGCTGGTTCTCGTTGACACTCCTCTGGCTCCATACTTCTCTGAGTGCATTACATCAGAGGACTTGGATGACATGAACATCGAAATAATGAGGCACACTCTTTACAAGGCATACCTTGAAGATTTTTACAGATTTTGTCAGAAACTTGGTGGTGCTACTACTGAGATAATGTCTGACCTTCTTGCTTTTGAGGCTGATAGAAGGGCTGTCAATATTACCATAAACAGTATTGGTACTGAGATGACCGTAGGAAATTGTACTCTAACTTCGGTTTGTTCTACCCATATGGTCACGAGGAACTCGCTGTCTGTGAGGACATTGATCAGGTCCGTGCTCCAGATGCTTGACAAGGCATTCTATGAGGAAGAGGTCAAGAGGCATTGCTTAGCATTTGAGCAACAGTTTCACTATGCTGTGTTCTTCGCATATTTGAGGTTAAGGGAGCAAGAGATCAGGAATCTAATGTGGATTTCAGAATGTGTGGCTCAGAATCAAAAGTCCAGAGTTCATGACAGTGTTGTCTTCATATTTTAG 735 0.4272 MLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRHTLYKAYLEDFYRFCQKLGGATTEIMSDLLAFEADRRAVNITINSIGTEMTVGNCTLTSVCSTHMVTRNSLSVRTLIRSVLQMLDKAFYEEEVKRHCLAFEQQFHYAVFFAYLRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03869 244 SUPERFAMILY V-type ATP synthase subunit C 1 242 IPR036079 -
Trre5g03869 244 Pfam ATP synthase (C/AC39) subunit 3 237 IPR002843 GO:0046961
Trre5g03869 244 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT AC39 180 244 IPR016727 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03869 Trre-Chr5 39629303 39631739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03869 1 244 Primary Pumps ATPases(2) AT3G28710 76.404 2.13e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03869 K02146 - mnt:21385529 407.142