Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03861 ATGGACTTGGATAATATTGAGTGTGTGTCATCTTCTGATGGAATGGAAGAGGATGAGATCCATTCACACCATCACTCTGAATTTTCTTCCACAAAGCATAGAAATGGTACCACAAATATTAATAATATTTTGGGTCCAAATGGTATTACTCCTGCAACCAGCGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCTATGTACCCTCCAATTCATCAGTGTCACAATGGCCACACTATATGTTCCACATGCAAAACGCGAGTGCATAACCGGTGTCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTAGAAAAGGTGGCTGAATCACTTGAGTTACCGTGCAAGTACTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGGCCATATAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGCGATATTCCCTTCCTTGTTGCTCATTTGAGGGATGATCATAAGGTGGACATGCACACTGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCACGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCACTGTTTTGGTCAATATTTCTGCCTTCATTTCGAAGCTTTTCAGCTTGGCATGGCCCCTGTTTACATGGCATTTCTTCGTTTTATGGGCGATGAAAATGATGCTCGGAACTACAGCTATAGCCTGGAAGTTGGGGCCAATGGCAGGAAACTAATTTGGGAGGGTACACCTCGAAGTGTTCGGGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGTCTCATCATTCAAAGAAATATGGCACTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAACTTAGAGTCACAGGAAGAATTTGGAAGGAACAGAATCAAGAAAATGGAGTGTGCATACCTAATATTTGTAGCTTACATGTTATTTAA 981 0.4179 MDLDNIECVSSSDGMEEDEIHSHHHSEFSSTKHRNGTTNINNILGPNGITPATSVHELLECPVCTNSMYPPIHQCHNGHTICSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNQENGVCIPNICSLHVI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03861 326 MobiDBLite consensus disorder prediction 14 31 - -
Trre5g03861 326 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Trre5g03861 326 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Trre5g03861 326 SUPERFAMILY RING/U-box 53 101 - -
Trre5g03861 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 167 IPR013083 -
Trre5g03861 326 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 302 IPR008974 GO:0005515
Trre5g03861 326 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Trre5g03861 326 CDD Sina 175 303 - -
Trre5g03861 326 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre5g03861 326 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 36 308 - -
Trre5g03861 326 SUPERFAMILY TRAF domain-like 114 306 - -
Trre5g03861 326 FunFam E3 ubiquitin-protein ligase SINAT3 11 112 - -
Trre5g03861 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 113 IPR013083 -
Trre5g03861 326 MobiDBLite consensus disorder prediction 1 35 - -
Trre5g03861 326 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Trre5g03861 326 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03861 Trre-Chr5 39568339 39571499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03861 27 309 C3H Transcription Factor Family AT2G41980 75.618 1.69e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03861 K04506 - gmx:100810573 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03861 5 39568339 39571499 Trre5g03861 5 39568339 39571499 ECH