Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03859 ATGGGTGAAAGAATTGTCGTGTTCCTACTCTTCCTTTTCAGTTACTTGTTGGTTGACGTGGTAACAAAAACATCGCCTGATGACTACGTTGCACTTTTGTTTATTAAGCATGAGTGGAAGAATGCGCCACCGAGTTGGGAGGTCTCGGAGGATCCTTGTGGCGATTGGGTTGGCATTGGGTGCTTCAATTCACTGGTTACCAACATATCATTGGTAGGCATGGATTTGTCTGGCAAGCTTTCACCAGAAATTGGATCACTATCTGAATTACAGAGTTTGGATCTCTCCTACAATAAGAATTTAATAGGACCGCTTCCTGATGAAATCGGAAACATAAAAAAGCTGACAAACTTACTGCTTATTGATTGTGGTTTCTTCGGTCCCATTCCAGATACAATAGGAAATCTACCACGACTTGCATTCCTGTCTTTGAGTTCTAATAGTTTTAGTGGAAGAATTCCAGCTACTATTGGTAATCTCTCAAATCTTTATTGGTTAGACTTAGCAGAAAACCAGCTTGAGGGTCCCATCCCAAAATCAAATGGAACTACTCCAGGTCTAGATATGCTGCACAAAACAAGGCACTTTGGTTTTGGGAATAATAAGCTTTCAGGAAACATTCCAGCTCAAATTTTTAGTTCTGAAATGTCTTTGACACATTTACGTTTTGAAAGCAACCAATTTACCGGCAGCATTCCATCTACACTTGGACTTGTACAGAAACTGGAAGTGATGCGCTTGAATAACAATTCTTTAAGTGGACCTTTGCCTCAAAACATCCACAATCTTACAAAAGTTAAGGAATTGTACCTGTCCACAAATCGCCTGTCCGGTTCCCTGCCAAACCTTATAGGAATGAATGTCCTCAGCTACCTGGATCTGAGCAATAACGGATTTGATCAATCAGACTTTCCACCATGGTTATCTACTCTAAAGTCTCTAAGAACATTAGCGATGGAGGCTATACAACTTAAAGGACCTATTCCTATTTCTTTCTTCGGCCTGGTACAGTTACGGACAGTGATGCTGAAAAAAAACCAGCTGAATGGCACTTTAGATATTGGCAAAACTATTAGCGACCAACTGGGACTCCTTGATTTGCAATATAATTCTATCGCAAATTTTGATCCACAAATTGATGTCTCTAAAGTGGCGATAATACTAGTGGATAATCCAGCCTGCCAAGAAACAGGAGTTGTAAAGACATACTGCTCCATTGCAAAAATGGATGACTCATATACAACGCCGCTAAATAATTGCTTTCAATATGTCTGCAAATTAAATCAGATAGTAAGCCCGAATTGCAAATGTGCATACCCCTATACAGGGACTTTAACTTTTAGAGATCCTTCCTTCTTGTACTTGGGAAACAATACTGTGTTTGCAATGCTAGAACTTACTCTAATGCAGTCTTTTAGAAGTCATGAGAAACCCGTGGATTCAGTTTCTTTAAGCAATCCAAGGAGGAGTACAGAAAAGTATCTTGATTTGACGTTAGAAATATTTCCATCAGGCCAAGATTTTTTCAATAGAACCAGTATTTCTGGCATAGGCTTTATGCTTAGCAACCAAACATTCAAGCCTCCTCCAATCTTTGGACCATTTTATTTCATTGCTAATACGTATGAACACTATAATGATTCAGTAATAGAAAGTCCAGTGATATCTAGTAAATCTTCAAATATCGGCATCATAGCTGGAGCTGCTACTGGTGGTTGTGTCCTGGTTTTGTTATTACTTCTTGCAGTTGTTTACGGTTTCCTCCAAAAGAACAAGGCAAAAAGAGCAACCAAGAAAAACAATCTTTTTGAAGGATGGGGTCCTGATGAGAACAATAGTAGCATCCCACAGTTAAAAGGTCCGAGGCGCTTCACTTTCGAAGAGATTCAGAACTACACCAAAAACTTCTCACAATTCAATCTTATAGGATCTAGGGGTTATGGGAAGGTTTATAGGGGAACTCTTCTCAATGGACAACTAGTTGTAGTAAAACGAGCTCAAAATGAATCAATGCAAGGAGGGATGGAATTCAAAACTGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGCCTTGTTGGTTTTTGCTTTGAGCGAGGAGAACAAATATTGGTTTATGAGTATGTTGTGAATGGTACTTTGACAGATGCTCTTTCAGGGAAGTTAGGAATTAGATTGGACTGGATTAGTAGGCTAAAAATAGCCCTTGGTGCTGCTAGGGGGCTGTATTATCTTCATGAACATGCCAATCCTCCCATCATACATAGAGACGTCAAATCAACCAACATTTTACTCGACGAACACTTGAATGCTAAAGTATCTGATTTTGGTATTTCCAAACCTTTGGATACTGCAAAAGGTTATATTACCACTCAAGTCAAAGGGACAATGGGCTACTTGGATCCAGAGTATTACATGACGCAACAATTGACTGAAAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGTTGATAACTGCAAGAATGCCAATAGAAAGAGGGAAATACATTGTGAAAATGGTTATGAATACTATTGACAAGACAAAAGAATTATACGGTCTTGAGGAAATCCTTGATCCTGTCACTGATTTTAAGGCATCATTGAAGAGTTTTGAAAAGTTTATGGATCTTACAATTAAATGTGTTGAAGAGTCAAGTTCAACGAGGCCTTCAATGAATTATGCATTGAAAGAAATTGAAAACATGTTGTTGTTGGCTGGTGAAAACCCGAATGCTGAACCAGCATCTAACTCGTCTAGTTATAATACTAGTTGGAATTCCATGCAGCCTTATTATGATAATGAGGATTTTGATTCAAATGTGATACTTCCACATACATAA 2856 0.3859 MGERIVVFLLFLFSYLLVDVVTKTSPDDYVALLFIKHEWKNAPPSWEVSEDPCGDWVGIGCFNSLVTNISLVGMDLSGKLSPEIGSLSELQSLDLSYNKNLIGPLPDEIGNIKKLTNLLLIDCGFFGPIPDTIGNLPRLAFLSLSSNSFSGRIPATIGNLSNLYWLDLAENQLEGPIPKSNGTTPGLDMLHKTRHFGFGNNKLSGNIPAQIFSSEMSLTHLRFESNQFTGSIPSTLGLVQKLEVMRLNNNSLSGPLPQNIHNLTKVKELYLSTNRLSGSLPNLIGMNVLSYLDLSNNGFDQSDFPPWLSTLKSLRTLAMEAIQLKGPIPISFFGLVQLRTVMLKKNQLNGTLDIGKTISDQLGLLDLQYNSIANFDPQIDVSKVAIILVDNPACQETGVVKTYCSIAKMDDSYTTPLNNCFQYVCKLNQIVSPNCKCAYPYTGTLTFRDPSFLYLGNNTVFAMLELTLMQSFRSHEKPVDSVSLSNPRRSTEKYLDLTLEIFPSGQDFFNRTSISGIGFMLSNQTFKPPPIFGPFYFIANTYEHYNDSVIESPVISSKSSNIGIIAGAATGGCVLVLLLLLAVVYGFLQKNKAKRATKKNNLFEGWGPDENNSSIPQLKGPRRFTFEEIQNYTKNFSQFNLIGSRGYGKVYRGTLLNGQLVVVKRAQNESMQGGMEFKTEIELLSRVHHKNLVSLVGFCFERGEQILVYEYVVNGTLTDALSGKLGIRLDWISRLKIALGAARGLYYLHEHANPPIIHRDVKSTNILLDEHLNAKVSDFGISKPLDTAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARMPIERGKYIVKMVMNTIDKTKELYGLEEILDPVTDFKASLKSFEKFMDLTIKCVEESSSTRPSMNYALKEIENMLLLAGENPNAEPASNSSSYNTSWNSMQPYYDNEDFDSNVILPHT 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03859 951 Gene3D Transferase(Phosphotransferase) domain 1 712 922 - -
Trre5g03859 951 Gene3D Phosphorylase Kinase; domain 1 608 711 - -
Trre5g03859 951 FunFam Leucine-rich repeat protein kinase family protein 183 282 - -
Trre5g03859 951 FunFam Leucine-rich repeat family protein 27 182 - -
Trre5g03859 951 Pfam Protein kinase domain 637 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03859 951 Gene3D Ribonuclease Inhibitor 183 284 IPR032675 -
Trre5g03859 951 Gene3D Ribonuclease Inhibitor 27 182 IPR032675 -
Trre5g03859 951 ProSiteProfiles Protein kinase domain profile. 636 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03859 951 CDD STKc_IRAK 642 907 - -
Trre5g03859 951 SUPERFAMILY L domain-like 43 382 - -
Trre5g03859 951 FunFam receptor-like protein kinase FERONIA 606 711 - -
Trre5g03859 951 PANTHER RECEPTOR-LIKE PROTEIN 55 36 907 - -
Trre5g03859 951 SMART serkin_6 636 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03859 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672|GO:0006468
Trre5g03859 951 Gene3D Ribonuclease Inhibitor 285 410 IPR032675 -
Trre5g03859 951 SUPERFAMILY Protein kinase-like (PK-like) 612 903 IPR011009 -
Trre5g03859 951 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 712 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03859 Trre-Chr5 39520814 39534977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03859 8 942 Receptor kinase-like Gene Family AT5G49760 53.830 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre5g03859 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03859 - - gmx:100782366 1262.67