Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03855 ATGGAGTATGGAAGGTTAGGACTATCCGAGCCTGGAGGCTCGTCTCCCTCCCTCTCCGAACCTACAATGTTCACATCCAAACCTAGATCTTCTAAGAAGAAAATCGTTTTTCTTTCACTACTTGCTGTGTTACTAATAGTTGTCTCCGCCGTCTCAGCCGCAATGCTCACCGGAATCCATTACCGAACATCCGAACCAAAAAATCCAACTCTAAAACGTAATCCAACACAAGCAATTTCAAAAACATGTAGCAAAACTCGTTTTCCATCACTATGTGAAAATTATCTTCTCGATTTTCTTGGATCCGATGTTGCATCGGAAAAAGACTTAATCCACATTTCACTCAACATGACACTACAACACATTTCAAAAGCACTTTATTCCTCCGCCGCTATCTCATCCACCGTCGGCATGAATCCTCGCATCCGCGCCGCTTATATGGACTGTCTCGAACTTCTAGACGATTCCGTCGATGCACTTGCTCGTTCACTCACTTCCGTCGTACCTTCATCTTCCTCCGGTTCCGTTAAGCCTCTTACAGCTTCCTCAAACGACGATGTACTCACGTGGCTCAGCGCCGCGTTAACTAACCAAGACACGTGTGCTGACGGTTTTTCCGACGTTTCCGGATCCGTGAAGGATCAGATGGCGAGTAACATAAAAGATTTGTCAGAGCTTGTAAGTAATTGTTTAGCTATTTTCTCTGCTTCCGGTGCCGGAGATGATTTCTCCGGTGTTCCGATAGGGAATAAGAGACGGTTAATGACAATGCCGGAGGATGATAATGATGATGAGTTTCCGGTATGGTTGAAAAAACGTGAGAGGAGGTTGTTGAGTTTGCCGGTGACGGCGATACAAGCGGATGTGGTTGTTTCTAAAGACGGTAACGGAACGGTGAAAACTATAGAGGAAGCACTTAAGAAGATACCTGAGTATGGTAACCGACGGTTTATTATCTATATCAAACAAGGAAGGTACGAAGAGGACAATTTAAAGATAGGAAGGAAGAAAACTAATGTCATGATCATAGGAGACGGAAAGGGAAAGACAGTGATCACAGGAGGCAAAAATGTTTTGCAAAATTTGACCACATTTCACACAGCTTCCTTTGCTGCAAGTGGTCCAGGTTTCATTGCAAGAGATGTAACATTTGAGAATTACGCCGGACCGGCGAAACACCAAGCAGTGGCTCTCCGTGTCGGATCGGACCATGCGGTGGTGTACCGTTGCAACATCATAGGATACCAAGACACAATGTATGCACACTCAAACCGTCAATTCTACCGCGAATGTGATATTTATGGTACCGTGGACTTTATATTTGGCAATGCTGCAGTTGTTTTTCAAAACTGTAGTCTCTATGCACGCAAGCCCATGCCGCAGCAAAAAAACACTATCACAGCCCAAAACAGAAAAGACCCAAATCAAAACACGGGTATATCCATCCACAATTGTCGGATCCTTGCCACGTCAGATCTACAAGCATCCAAGGGTAGCTATCCGACGTATCTAGGTCGTCCGTGGAAATTATACTCTAGAACAGTGTACATGTTATCGTACATGGGTGATCATTTGCATCCACGTGGATGGTTAGAGTGGAATACAACTTTTGCTCTAGACACTTTGTATTATGGTGAGTACATGAATTATGGTCCGGGTGGAGCTATTGGACAAAGAGTCCAATGGCCCGGGTATCGTGTTATTACATCCACCGTGGAAGCGAATAGATTCACGGTGGCCCAATTTATATCGGGATCAACTTGGATACCGTCTACTGGGGTTGCATTCGTAGCTGGCCTATCCACTTGA 1809 0.4489 MEYGRLGLSEPGGSSPSLSEPTMFTSKPRSSKKKIVFLSLLAVLLIVVSAVSAAMLTGIHYRTSEPKNPTLKRNPTQAISKTCSKTRFPSLCENYLLDFLGSDVASEKDLIHISLNMTLQHISKALYSSAAISSTVGMNPRIRAAYMDCLELLDDSVDALARSLTSVVPSSSSGSVKPLTASSNDDVLTWLSAALTNQDTCADGFSDVSGSVKDQMASNIKDLSELVSNCLAIFSASGAGDDFSGVPIGNKRRLMTMPEDDNDDEFPVWLKKRERRLLSLPVTAIQADVVVSKDGNGTVKTIEEALKKIPEYGNRRFIIYIKQGRYEEDNLKIGRKKTNVMIIGDGKGKTVITGGKNVLQNLTTFHTASFAASGPGFIARDVTFENYAGPAKHQAVALRVGSDHAVVYRCNIIGYQDTMYAHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMPQQKNTITAQNRKDPNQNTGISIHNCRILATSDLQASKGSYPTYLGRPWKLYSRTVYMLSYMGDHLHPRGWLEWNTTFALDTLYYGEYMNYGPGGAIGQRVQWPGYRVITSTVEANRFTVAQFISGSTWIPSTGVAFVAGLST 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03855 602 FunFam Pectinesterase 282 600 - -
Trre5g03855 602 SUPERFAMILY Pectin lyase-like 283 599 IPR011050 -
Trre5g03855 602 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 236 IPR035513 -
Trre5g03855 602 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Trre5g03855 602 Pfam Plant invertase/pectin methylesterase inhibitor 78 233 IPR006501 GO:0004857
Trre5g03855 602 SMART PMEI_2 74 233 IPR006501 GO:0004857
Trre5g03855 602 CDD PMEI-like_3 83 236 - -
Trre5g03855 602 Gene3D - 282 600 IPR012334 -
Trre5g03855 602 NCBIfam pectinesterase inhibitor domain 56 234 IPR006501 GO:0004857
Trre5g03855 602 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 235 IPR035513 -
Trre5g03855 602 MobiDBLite consensus disorder prediction 1 26 - -
Trre5g03855 602 PANTHER PECTINESTERASE 45 590 - -
Trre5g03855 602 FunFam Pectinesterase 75 237 - -
Trre5g03855 602 Pfam Pectinesterase 288 585 IPR000070 GO:0030599|GO:0042545
Trre5g03855 602 MobiDBLite consensus disorder prediction 12 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03855 Trre-Chr5 39422323 39426116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03855 1 601 Carbohydrate Esterase AT5G53370 65.066 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03855 - - gmx:100808236 866.3