Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03851 ATGTATAGAGAAAATGGTCTTCTTTTTCCATGGTCATATCTACACAATTTCTCTCAAGAGCTTCATCAACTTGAAGAATACTGCCAAACCCAGAAGTTCAATGCATCAATGGGTGACCTTTTTCAGTTTTCTGCAATGTCTGAGTATGATTTTGCAGCTGAAGGAGATCTGTTCAAAGCGCCTGAACCGATTATCGAAGAGTCAAGCATTGAAGTGGATCCCATGACAGCCGCGATCTCAATGATATCTTGTGGCGAGGATGTAAAATCTGCAGATATTTCTATTCTTCAAGACGAACAACTTCTCAGCGATGTATTCTATGATTGCAAAAAGGATCTATTTGAAAAGACCGCAATGGAGTCACCAATTTCTGAGATTCTTGAAATCAAGGTTCCACTATTGAGCATTGATGAGAACACAATTCAAGAAAACAAACAACTTCCTGACATGACATTACCAAAGAGCGTCAGCTCAGGATGTTTAAGCTCAATGGACTGGATGCATGGATCTGCTTCAATGAAGCCTGCTTTTCTCGGCGTCTCAGAAGTAGACTTTGATGCAGTTTATGGCATGAGGAGATCATTTAGTGAAGGAGATATAAAGACTCTAGGCAACGGTAATATGAACACTGTCGAATCTCCCCGAGAGAGGCCTTTTTTTACTAGCAGCGAGGAGCGTTTACAAAAGCTCTCTAGATACAGAAACAAGAAGGCAAAGAGAAATTTTGGGAGGAAAATCAAGTATGCCTGCAGGAAGGCTCTAGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCGAAGAATGAAGAATCTGAGACAAATAGGGAATGA 831 0.4091 MYRENGLLFPWSYLHNFSQELHQLEEYCQTQKFNASMGDLFQFSAMSEYDFAAEGDLFKAPEPIIEESSIEVDPMTAAISMISCGEDVKSADISILQDEQLLSDVFYDCKKDLFEKTAMESPISEILEIKVPLLSIDENTIQENKQLPDMTLPKSVSSGCLSSMDWMHGSASMKPAFLGVSEVDFDAVYGMRRSFSEGDIKTLGNGNMNTVESPRERPFFTSSEERLQKLSRYRNKKAKRNFGRKIKYACRKALADSQPRIRGRFAKNEESETNRE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03851 276 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 155 270 IPR045281 GO:0009909
Trre5g03851 276 Pfam CCT motif 226 268 IPR010402 GO:0005515
Trre5g03851 276 ProSiteProfiles CCT domain profile. 226 268 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03851 Trre-Chr5 39284830 39287776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03851 222 274 C2C2-CO-like Transcription Factor Family AT5G57660 50.943 3.09e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g03851 CCT 7.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03851 - - gmx:100814332 395.201