Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03850 ATGAGACGATGGAACCTGCTTTGGGTATTCTTAGTATTCCGTCAAATTCTTTGTGAAGATTTGTGTTATTTGCAAGCAAATCCATGGTTCCTGCACACAATGTTGCAAATGTTCCACTTATTTCCATGCCATGTGCGCATCAAGGGCCGGTTACCGAATGGAGGTGAGTTGCATTGCTTGAAGAAAAATGGAAAACAAACAACAAAAATGGTTTCTCACTGTGCTTACCACAGAGCTCCAAATCCCGACAATGTTTTGATTTTGCAAACCCCTCTCGGGGTAATTTCAACAAAAAGCCTTCTCCAAAAGAGTAAAGCTGGATCAAGATTAATCTCATCTACCAGAACAAAAAAGGAAGACACTCCTATTGATATCTCTGAGCATGACCCGTTCTCTGCGGCTAGGTGTCGTATCTTTAAAAGAACAAATCATATGAAAAAGAGAGCAGCAGATGAAGCCATTTATCATAAAGCGAGGGGTCACTGCCACCATCTTTTAGATGCAATACAGATAGTAGAGGAGCCTCGAGCTTTCTCTTCTTTCAGAGAACGCCTTTACCATTTGCAGAGAACCGAAAATCAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTGCACGGAAGAATATTCAAGAAGGAGCCCTCTTTGCACGGAAGAATATTCAAGAAGGAGAAATGCTGTTTAAGATAAGCGAAGAAGTGGTCGTAGATGCCACTGATAAAGGGAACATAGCACGGCTAATAAATCATTTTTGTATGCGAAATTGCTATGCAAGGATCATGAGTGTGGGCGATGATCAGAGCCGGATTGTACTCATTGCAAAGACTAACGTAGCTGCTGGTGACGAGCTAACCTACGACTATTTATTCGATCCTGACGAGCCAGATGAATTTAAAGTCCCTTGCATGTGTAAAGCTCCAAATTGCAGGAAATTCATGAATTAG 957 0.4201 MRRWNLLWVFLVFRQILCEDLCYLQANPWFLHTMLQMFHLFPCHVRIKGRLPNGGELHCLKKNGKQTTKMVSHCAYHRAPNPDNVLILQTPLGVISTKSLLQKSKAGSRLISSTRTKKEDTPIDISEHDPFSAARCRIFKRTNHMKKRAADEAIYHKARGHCHHLLDAIQIVEEPRAFSSFRERLYHLQRTENQRVCFGRSGIHGWGLFARKNIQEGALFARKNIQEGEMLFKISEEVVVDATDKGNIARLINHFCMRNCYARIMSVGDDQSRIVLIAKTNVAAGDELTYDYLFDPDEPDEFKVPCMCKAPNCRKFMN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03850 318 SMART set_7 194 299 IPR001214 GO:0005515
Trre5g03850 318 SUPERFAMILY SET domain 184 318 IPR046341 -
Trre5g03850 318 Gene3D SET domain 179 318 IPR046341 -
Trre5g03850 318 ProSiteProfiles SET domain profile. 194 293 IPR001214 GO:0005515
Trre5g03850 318 Pfam SET domain 242 292 IPR001214 GO:0005515
Trre5g03850 318 PANTHER PHD FINGER PROTEINS 50 295 - -
Trre5g03850 318 ProSiteProfiles Post-SET domain profile. 302 318 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03850 Trre-Chr5 39261353 39263652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03850 224 318 C2H2 Transcription Factor Family AT2G23740 36.364 9.54e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre5g03850 SET 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03850 - - gmx:100811337 427.943