Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03849 ATGTCTCGCAGCTCTCAAACATGCAACCATGGAAGAGAACACAGCATTACGATTTTCGGTGTTAAACTCACCGGAAGAACTAATGACGACGACAACAACAACATCCAACTCTCTGAATACCAACAACCTCTGCCTCAAGTTTCCACTTCCACTGGTGCGAGTTATGTCTCCGACAATGTCGTTCATGCCCCGGACCGATCCCGCAAATGCAAACGAGGTGTTCCTTGGACAGAAGAAGAACAAAGGTTGTTCTTGAAAGGGTTGAAAGAGATTGGTAAGGGTGATTGGAAAGGAATTTCTAGCAACTTTGTTAAAACTCGGACTGCAACTCAGGTTGCAAGTCATGCTCAAAAGCATTTTCTCCATCGTCCTAACCAGAATCGCCGCCGCAAGAAACCTAGTATCTTTGATCTTAATAAGGTGATAGAATCTTCAACTATTATGGAAAATGAGCAGATTCGGCAAGTACCTCCACCAACCCCCACCGCATATCCATCCACACACAATGGAGGAACTCCCGACGGCCCTTTACCGATGAGTCTTGGTCCAGTAGCATTATCGGTGTGGCCTCTTTCTTGGTTCGACTTGAATGGCAATGGATCTTCCTCTTCCTCTTCTTCTTCTTCCACTAAGACTTTTTCATTGTCGTTGAAGCTATAA 660 0.4515 MSRSSQTCNHGREHSITIFGVKLTGRTNDDDNNNIQLSEYQQPLPQVSTSTGASYVSDNVVHAPDRSRKCKRGVPWTEEEQRLFLKGLKEIGKGDWKGISSNFVKTRTATQVASHAQKHFLHRPNQNRRRKKPSIFDLNKVIESSTIMENEQIRQVPPPTPTAYPSTHNGGTPDGPLPMSLGPVALSVWPLSWFDLNGNGSSSSSSSSSTKTFSLSLKL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03849 219 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Trre5g03849 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 124 IPR017930 -
Trre5g03849 219 MobiDBLite consensus disorder prediction 147 176 - -
Trre5g03849 219 MobiDBLite consensus disorder prediction 199 219 - -
Trre5g03849 219 Gene3D - 76 123 - -
Trre5g03849 219 NCBIfam myb-like DNA-binding domain, SHAQKYF class 71 122 IPR006447 GO:0003677
Trre5g03849 219 CDD SANT 75 120 IPR001005 -
Trre5g03849 219 PANTHER TRANSCRIPTION FACTOR KUA1 5 197 - -
Trre5g03849 219 SMART sant 72 122 IPR001005 -
Trre5g03849 219 SUPERFAMILY Homeodomain-like 70 123 IPR009057 -
Trre5g03849 219 ProSiteProfiles SANT domain profile. 71 124 IPR017884 -
Trre5g03849 219 ProSiteProfiles Myb-like domain profile. 75 120 IPR001005 -
Trre5g03849 219 FunFam transcription factor MYB1R1 74 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03849 Trre-Chr5 39257010 39259471 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g03849 Myb_DNA-binding 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03849 - - tpra:123909419 220.32