Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03845 ATGCAAGAAGAGAGGGAACGAGGAGACGCGGGGTTGAAGCCTTACTTACAATATCTCAATCAGAAAAGAGGCTACATATACTTCTTTTTCGGTTCTTTTGCTCACCTGATGTTTGTGGTTTGCCAGATATTGCAAAACTCGTGGATGGCTGCCCGTGTTGACGACCCTCAATCTTCACACTTCGATTCCTCGGAGTTTAGTTGGAAGGTTTCATCTGATTTGAGCATTGTGGATCTTGATATCTCATTCAACCTCACTTATGTCGTCGGATCAACTATATGTTGTTACATGGATCTTATAGTTTTAACATCCTTCACTTGGCAAGTCTTGTTTGTCACTATACCAATGGCTTATGTTATTGTAAAGTTACAGAAACACTACTATGCCTGTGCAAAAGAACTTATGCGGATGAATGGAACAACAAAATCCTCTGTAGCTAATCATGTAGCTAAAACTTTTGCTGGAGCTACGACAATAAGGGCTATTGAGGAGGAAGATCAAACAGCGTATGCCGTTGTTCTTGCCTCTGCGGCACTTTGCCTTGCTATGCTTCCATTTGGAACCTTAACATCACGATTTATCGGTATGGCTCTTTCTTATGGCCTTTCGCTAAATGGTTCTTTAATATATTCAATTCAAAGCCAATGCATTATGGCAAATTATATAGTATCTGTAGAAAGGATAAAACAATACACCGATATACCAAGTGAAGCTCAGGAAGGAAGTTGTCCTCTAGTTAATTGGCCAATTGTAGGCAAAGTAGAAATACGCCATTTACAGATACGATACAGGCCGAATGAACCACTTGTACTTCACGGTGCTTTGTTTCGTCTTGTGGAGCCGGCGGGTGGAAAAATTATAGTTGATGGCATAGACATCTCATCTATTGATCTTCATGAATTGAGGTCAAGTTTTGGTATTATACCTCAAGATCCTACCCTTTTCATTGGGACAATTAGATATAACTTAGACCCTTTATCTCAACATTCTGATCAAGAAATATGGGAGGTTCTTCAAAAGTGTCAGTTACGAGAGTCTGTCAAAGATAAAGGCGGCTTAGATTCCTCAGTTGTCGAAGACGGATCAAACTGGAGCATTGGACAAAGGCAACTATTCTGTTTAGGGCGTGCTCTTTTGAGGCGAAGTAAGATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTTCAGAATACCATTAGAAAGGAGTTTGCTGATTGTACAGTGATAATAGTAGCACACAGGATACCTACTGTGATGAATTGCAATATGGTTCTTTCCATAAGCGACGGAAAGTTGGTTGAGTATGATGAGCCAATGAAGTTAATGAAGAGAGAAAAATCATTGTTTGGACAACTTGTAAAGGAATATTGGTCTCATTTTCAGTAG 1407 0.3959 MQEERERGDAGLKPYLQYLNQKRGYIYFFFGSFAHLMFVVCQILQNSWMAARVDDPQSSHFDSSEFSWKVSSDLSIVDLDISFNLTYVVGSTICCYMDLIVLTSFTWQVLFVTIPMAYVIVKLQKHYYACAKELMRMNGTTKSSVANHVAKTFAGATTIRAIEEEDQTAYAVVLASAALCLAMLPFGTLTSRFIGMALSYGLSLNGSLIYSIQSQCIMANYIVSVERIKQYTDIPSEAQEGSCPLVNWPIVGKVEIRHLQIRYRPNEPLVLHGALFRLVEPAGGKIIVDGIDISSIDLHELRSSFGIIPQDPTLFIGTIRYNLDPLSQHSDQEIWEVLQKCQLRESVKDKGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQNTIRKEFADCTVIIVAHRIPTVMNCNMVLSISDGKLVEYDEPMKLMKREKSLFGQLVKEYWSHFQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03845 468 Pfam ABC transporter 274 392 IPR003439 GO:0005524
Trre5g03845 468 Gene3D - 240 462 IPR027417 -
Trre5g03845 468 Gene3D ABC transporter type 1, transmembrane domain 1 239 IPR036640 GO:0005524|GO:0016020
Trre5g03845 468 CDD ABCC_MRP_domain2 252 445 - -
Trre5g03845 468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 212 461 IPR003439 GO:0005524
Trre5g03845 468 SUPERFAMILY ABC transporter transmembrane region 27 237 IPR036640 GO:0005524|GO:0016020
Trre5g03845 468 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 171 273 - -
Trre5g03845 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 458 IPR027417 -
Trre5g03845 468 FunFam ATP-binding cassette (ABC) transporter, putative 271 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03845 Trre-Chr5 39163249 39165935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03845 257 468 Calmodulin-binding Proteins AT2G36910 29.694 5.76e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03845 K05666 - gmx:100817665 605.905