Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03844 ATGCAAGAAGAGAGGGAACGAGGAGACGCGGGATATTGCAAAACTCGTGGATGGCTGCCCGTGTTGACGACCCTCAAGTCAGCTAGCACATCAAAATTAGTTGTAGTTTACTTGTTGATTGGAGTCCTCTCTAATATTTTCATGATAATCAGAAGTCTTCTTGCTGCTCTATTGGATTTTCAATCATCAAAACATATATTCTCACAGCTAATAAACTCTCCTTTTCGAGCACCGATGTCTTTTTATGACTCTACACCTTTAGGAAGGATACTTAGTAGGGTTTCATCTGATTTGAGCATTGTGGATCTTGATATCTCATTCAACCTCACTTATGTCGTCGGATCAACTATATGTTGTTACATGGATCTTATAGTTTTAACATCCTTCACTTGGCAAGTCTTGTTTGTCACTATACCAATGGCTTATGTTATTGTAAAGTTACAGAAACACTACTATGCCTGTGCAAAAGAACTTATGCGGATGAATGGAACAACAAAATCCTCTGTAGCTAATCATGTAGCTAAAACTTTTGCTGGAGCTACGACAATAAGGGCTATTGAGGAGGAAGATCAAACAGCGTATGCCGTTGTTCTTGCCTCTGCGGCACTTTGCCTTGCTATGCTTCCATTTGGAACCTTAACATCACGATTTATCGGTATGGCTCTTTCTTATGGCCTTTCGCTAAATGGTTCTTTAATATATTCAATTCAAAGCCAATGCATTATGGCAAATTATATAGTATCTGTAGAAAGGATAAAACAATACACCGATATACCAAGTGAAGCTCAGGAAGGAAGTTGTCCTCTAGTTAATTGGCCAATTGTAGGCAAAGTAGAAATACGCCATTTACAGATACGATACAGGCCGAATGAACCACTTGTACTTCACGGTATCACTTGCACATTTGAAGGAGGGCACAAGATCGGTATTGTTGGTAGAAACAGGCAGTGGAAAATCAACTCTGATAGGTCAAGTTTTGGTATTATACCTCAAGATCCTACCCTTTTCATTGGGACAATTAGATATAACTTAGACCCTTTATCTCAACATTCTGATCAAGAAATATGGGAGGTTCTTCAAAAGTGTCAGTTACGAGAGTCTGTCAAAGATAAAGGCGGCTTAGATTCCTCAGTTGTCGAAGACGGATCAAACTGGAGCATTGGACAAAGGCAACTATTCTGTTTAGGGCGTGCTCTTTTGAGGCGAAGTAAGATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTTCAGAATACCATTAGAAAGGAGTTTGCTGATTGTACAGTGATAATAGTAGCACACAGGATACCTACTGTGATGAATTGCAATATGGTTCTTTCCATAAGCGACGGAAAGTTGGTTGAGTATGATGAGCCAATGAAGTTAATGAAGAGAGAAAAATCATTGTTTGGACAACTTGTAAAGGAATATTGGTCTCATTTTCAGTAG 1470 0.3898 MQEERERGDAGYCKTRGWLPVLTTLKSASTSKLVVVYLLIGVLSNIFMIIRSLLAALLDFQSSKHIFSQLINSPFRAPMSFYDSTPLGRILSRVSSDLSIVDLDISFNLTYVVGSTICCYMDLIVLTSFTWQVLFVTIPMAYVIVKLQKHYYACAKELMRMNGTTKSSVANHVAKTFAGATTIRAIEEEDQTAYAVVLASAALCLAMLPFGTLTSRFIGMALSYGLSLNGSLIYSIQSQCIMANYIVSVERIKQYTDIPSEAQEGSCPLVNWPIVGKVEIRHLQIRYRPNEPLVLHGITCTFEGGHKIGIVGRNRQWKINSDRSSFGIIPQDPTLFIGTIRYNLDPLSQHSDQEIWEVLQKCQLRESVKDKGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQNTIRKEFADCTVIIVAHRIPTVMNCNMVLSISDGKLVEYDEPMKLMKREKSLFGQLVKEYWSHFQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03844 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 479 IPR027417 -
Trre5g03844 489 CDD ABCC_MRP_domain2 276 466 - -
Trre5g03844 489 Gene3D ABC transporter type 1, transmembrane domain 18 263 IPR036640 GO:0005524|GO:0016020
Trre5g03844 489 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 280 482 IPR003439 GO:0005524
Trre5g03844 489 Pfam ABC transporter transmembrane region 18 191 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03844 489 Pfam ABC transporter 319 413 IPR003439 GO:0005524
Trre5g03844 489 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 185 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03844 489 CDD ABC_6TM_ABCC_D2 18 256 IPR044726 GO:0140359
Trre5g03844 489 Gene3D - 317 483 IPR027417 -
Trre5g03844 489 Gene3D - 264 316 IPR027417 -
Trre5g03844 489 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 323 482 - -
Trre5g03844 489 SUPERFAMILY ABC transporter transmembrane region 30 261 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03844 Trre-Chr5 39163249 39165935 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03844 276 489 Calmodulin-binding Proteins AT2G36910 25.100 1.66e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03844 K05666 - twl:119985206 618.616