Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03842 ATGGCTGCCCGTGTTGACGATCCTCAAGTCAGCACATCAAAATTAGTTGTAGTTTACTTGTTGATTGGAGTTCTCTCTAATGTTTTCATGATAATCAGAAGTCTTCTTTCTTCTCTATTGGGTTTTCAATCATCAAAACAAATTTTCTCACAGCTAATGAACTCTCTTTTTCGAGCACCAATGTCTTTTTATGACTCTACACCTTTAGGAAAGATACTTAGTAGGGTTTCATCTGATTTGAGCATTGTGGATCTTGATATCTCATTGAACCTCACTTATGTCGTCGGATCAACTATATGTTGTTACATGGATCTTATAGTTTTAACATCCTTCACTTGGCAAGTCTTGTTTGTCACTATACCAATGGCTTATGTTATTGTAAAGTTACAGAAACACTACTATGCCTGTGCAAAAGAACTTATGCGGATGAATGGAACAACAAAATCCTCTATAGCTAATCATGTAGCTGAAACTTTTGCTGGAGCTATGACAATAAGGGCTTTTGAGGAGGAAGATTGTTTTTTCGAAAAGAATTTTAATCTAATTGATGTCAATGCCAGTGCTTTCTTTCACAGTTTTGCCTCAAATGAGTGGTTAGTCCAACGTGTAGAAACAGCGTATGCCGTTGTTCTTGCCTCTGCGGCACTTTGCCTTGCTATGCTTCCATTTGGAACCTTAACATCAGGATTTATCGGTATGGCTCTTTCTTATGGCCTTTCGCTAAATGGTTCTTTAGTATATTCAATTCAAAGCCAATGCATTATGGAAAATTATATAGTATCTGTAGAAAGGATAAAACAATACACTGATATACCAAGTGAAGCTCAGGAAGGAAGTTGTCCTCCAGTTAATTGGCCAATTGTAGGCAAAGTAGAAATGCGCGATTTACAGATACGATACAGGCCGAATGAACCACTTGTACTTCACGGTATCACTTGCACATTTGAAGGAGGGCACAAGATCGGTATTGTTGGTAGAACAGGCAGTGGAAAATCCACTTTGATAGGTGCTTTGTTTCGTCTTGTGGAGCCGGCGGGCGGCAAAATTATAGTTGATGGCACAGACATCTCATCTATTGATCTTCATGAATTGAGGTCGAGTTTTGGTATTATACCTCAGGATCCTACCCTTTTCAATGGGACAGTTAGATATAACATAGACCCTTTATCTCAACATTCTGATCAAGAAATATGGGAGGTTCTTCAAAAGTGTCAGTTACGAGAGTCTGTCAAAGATAAAGGCGGCTTAGATTCCTCAGTTGTCGAAGACGGATCAAACTGGAGCATTGGACAAAGGCAACTATTCTGTTTAGGGCGTGCTCTTTTGAGGCGAAGTAAGATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTTCAGAATACCATTAGAAAAGAGTTTGCTGATTGTATAATACCAACTGTGATGAATTGCAATATGGTTCTTTCCATAAGCGACGGAAAGTTGGTTGAGTATGATGAGCCAATGAAGTTAATGAAGAGAGAAAAATCATTGTTTGGACAACTTGTAAAGGAATATTGGTCTCATTTTCAGTAG 1575 0.3841 MAARVDDPQVSTSKLVVVYLLIGVLSNVFMIIRSLLSSLLGFQSSKQIFSQLMNSLFRAPMSFYDSTPLGKILSRVSSDLSIVDLDISLNLTYVVGSTICCYMDLIVLTSFTWQVLFVTIPMAYVIVKLQKHYYACAKELMRMNGTTKSSIANHVAETFAGAMTIRAFEEEDCFFEKNFNLIDVNASAFFHSFASNEWLVQRVETAYAVVLASAALCLAMLPFGTLTSGFIGMALSYGLSLNGSLVYSIQSQCIMENYIVSVERIKQYTDIPSEAQEGSCPPVNWPIVGKVEMRDLQIRYRPNEPLVLHGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGTDISSIDLHELRSSFGIIPQDPTLFNGTVRYNIDPLSQHSDQEIWEVLQKCQLRESVKDKGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQNTIRKEFADCIIPTVMNCNMVLSISDGKLVEYDEPMKLMKREKSLFGQLVKEYWSHFQ 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03842 524 Pfam ABC transporter transmembrane region 12 237 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03842 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 514 IPR027417 -
Trre5g03842 524 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 293 524 IPR003439 GO:0005524
Trre5g03842 524 Gene3D - 276 518 IPR027417 -
Trre5g03842 524 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 257 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03842 524 FunFam Multidrug resistance-associated protein member 4 275 519 - -
Trre5g03842 524 Pfam ABC transporter 308 455 IPR003439 GO:0005524
Trre5g03842 524 CDD ABC_6TM_ABCC_D2 2 269 IPR044726 GO:0140359
Trre5g03842 524 FunFam ABC transporter C family member 5 1 275 - -
Trre5g03842 524 CDD ABCC_MRP_domain2 289 501 - -
Trre5g03842 524 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 12 517 - -
Trre5g03842 524 SUPERFAMILY ABC transporter transmembrane region 11 274 IPR036640 GO:0005524|GO:0016020
Trre5g03842 524 Gene3D ABC transporter type 1, transmembrane domain 4 275 IPR036640 GO:0005524|GO:0016020
Trre5g03842 524 SMART AAA_5 317 483 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03842 Trre-Chr5 39122698 39127089 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03842 263 524 Calmodulin-binding Proteins AT2G36910 27.076 1.60e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03842 K05666 - gmx:100811468 774.622