Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03830 ATGGTTAGAAACTTATTAGTTTTGCTTTCAACAATTTTTGTAGTGGTTAATGCATTCAACAACCACAATGAGAATCATGGTGGTTACCCAACATGGTTTCCTAAATCTAATCATATGCTATTGTCTAAGTTTAAGGATGTTGTTCAGCCCAATGTAACGGTGTGGCTAAGGACGCTAGTGGCCAATTTAAGACCGTTACCGAAGCTATTAACTCATACCCGATTAAAAGTCGAGGTAGATACGTCTTCGTCGTCTATGTTAAAGCCAGTATCTACAATGAGTATATTACCATTGCTAAAAACAAGAATAATATTCTCTTATAAGTTATATGGTGATGGGCCTGCAAAGACAATTATCACCGGAAGCAAGAGTCTCAATAAAGGAGCTAGCAAAACAATGGACACTGCTACCTTCTCCACCCTAGCCAAAGATTTCATTGCTAAGTCAATTACATTTCAAAACACGGCGGGTCATGAAGCTGGTCCGGCAGTAGCACTTCACGTGAAAGGTGATCGTTCAACATTCTTTGATTGTGGAATTCATGGTTACCAAGAGACGTTGTACGTACACACACTCCGTCAATTCTATTGCAATTGTGAGATCTCTGGACATTCAACTACCTTGATCCAAAATTCTAAAATCATTGTGAGGAAGCCAGGTCCAGATCATGGCAACGTTGTGGTGGCAGATGGAACAAAAGAAATGAATGCAGTCACCAGAATAGTTCTTCAAAATTGCTCAATCATGCCATCACAACGTTGCCATGATCTGGACCTGGCTTCCTCACAATGA 792 0.4015 MVRNLLVLLSTIFVVVNAFNNHNENHGGYPTWFPKSNHMLLSKFKDVVQPNVTVWLRTLVANLRPLPKLLTHTRLKVEVDTSSSSMLKPVSTMSILPLLKTRIIFSYKLYGDGPAKTIITGSKSLNKGASKTMDTATFSTLAKDFIAKSITFQNTAGHEAGPAVALHVKGDRSTFFDCGIHGYQETLYVHTLRQFYCNCEISGHSTTLIQNSKIIVRKPGPDHGNVVVADGTKEMNAVTRIVLQNCSIMPSQRCHDLDLASSQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03830 263 PANTHER PECTINESTERASE 108 252 - -
Trre5g03830 263 SUPERFAMILY Pectin lyase-like 108 253 IPR011050 -
Trre5g03830 263 Gene3D - 102 262 IPR012334 -
Trre5g03830 263 Pfam Pectinesterase 109 254 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03830 Trre-Chr5 38879599 38880981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03830 109 252 Carbohydrate Esterase AT3G05620 43.709 4.91e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03830 K01051 - gmx:100775225 194.512