Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03828 ATGTCATCGACTTTGCTGGAAGTGACTCGGTCAGCGCATGAGGAAGTGGAGCGGCTGGAGAGATTGATAGTGAAGGATCTCCAGAATGAGCCTACATCCAACAAGGACCGTTTGTTTCAGAGTCACCGTGTTAGAAATATGATCGACACCATCACCTCTACCACTGAAAGACTGGTTGAGATATATGACGACCAAGACAATGCAAGGAAGGATGAGATTGCTGCATTGGGAGGACAAACTGCAACCGGAATTAATGTTTTCAGTGCCTTCTATGATAGACTCAAAGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGTGTTGTTGATGCTAATGACGATTTTGAAGCCCTGCTTAAAGAGGAACCTCAAATTGAGTTTAGCGGAGAGGAAGCTTTTGGTCGATACTTAGACATGCATGAATTATATCAGCAGTATGTCAATTCTAAATTTGGAGAGCCCATTGAGTATTCTGCATACATTGATATCTTTTCTGAAACAGATAAGATTCCACGCAAAATGAAAACGACCAGGCAGTACAGGGAGTACTTGGAGAATCTTTTGGAGTATCTGATATATTTTTTCCAACGGACAGAACCCCTGAAAGATCTTGATCGAATCTTTTCAAAGGTAACAACTGAGTTTGAAGAAAATTGGGCTACTGGAAAGGTACTGGGATGGGAGAATGTCAATCAGGAAAATGGACATGTACCTAGTCAGCACACTGCAATTGATCTTGATTATTACAGTACAGTTGAAGAGCTTATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCGCTGGCTGCATTGGGACTTAAGACTGGCGGCACTGTTCAGCAACGTGCAGAGAGGCTCTTCCTCATAAAGCATACTCCTCTTGAAAAATTGGACAAGAAGCATTTTGCCAAGGGGGCGCGTGGTTTAGAAAAAAATGGGGTGGCTTCTGCTCCACAAGAAGGAAATTTAAAAGAAATTGCATTAATGGAGGCCAAACTGTATAAACTGTGTGATTTGTTAGATGAGGCAATTGTTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTAACATATGAGGAAATTGTAGCAGAACAAGAGGAGGAAGAGGCACAAGAGGACTCTGAAAGCGATGATGATGAGCAGCAGATTTATAATCCCTTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTACTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGTGCTTTTGAACGACATTTTAAAGAATGGCGTCACCAACATGGGATGCGGTGCCTTGGTATACCAAATACAAAGAACTTCAACGAAATCACATCAATTGAGGAAGCAAAGGAGCTCTGGAAGAAGATACAACAGAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTACGAAGACAAAGAAGGCAACATCTATAACAAGAAAACATACACTGATTTACAGCGCCAGGGACTGATATGA 1527 0.4263 MSSTLLEVTRSAHEEVERLERLIVKDLQNEPTSNKDRLFQSHRVRNMIDTITSTTERLVEIYDDQDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDFEALLKEEPQIEFSGEEAFGRYLDMHELYQQYVNSKFGEPIEYSAYIDIFSETDKIPRKMKTTRQYREYLENLLEYLIYFFQRTEPLKDLDRIFSKVTTEFEENWATGKVLGWENVNQENGHVPSQHTAIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLIKHTPLEKLDKKHFAKGARGLEKNGVASAPQEGNLKEIALMEAKLYKLCDLLDEAIVRTKDNVVKKQALTYEEIVAEQEEEEAQEDSESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03828 508 PANTHER SPLICING FACTOR SF3A-RELATED 244 312 - -
Trre5g03828 508 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
Trre5g03828 508 Pfam Replication stress response SDE2 C-terminal 224 304 IPR025086 -
Trre5g03828 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Trre5g03828 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Trre5g03828 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03828 Trre-Chr5 38862428 38868670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03828 1 508 C2H2 Transcription Factor Family AT5G06160 75.049 0.0 760