Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03827 ATGAACTTTCCCAATCCTATGCTCATCCTAATTTGTTTCCTTTTCCTCTTCAACCTTCATCAATTACATATAGTAGTAGCACAAGCAACCATAGAAACATGCTTAGACAATTTTTGCCACACTAATCAACCACTAATCCGATTTCCATTCCATATAGAAGGAAAACAAGCAAAGACATGTGGATATCCAGGATTCAAAGTATCATGCAATGAAAATGAAAATATCCAAACACTTCTCAATCTACCTTATATGGAAAAACTCAAAATCCAAAAAATAAACTATGCCAAACAAGAACTTTTGGTGAATGATCCCAATAATTGTCTCCCTAAACAACTTCTCTCACTTAACCTCTCTTCTTCTCCATTTGATGCTGTTTACTACCAACAATTTACCTTTTTTAACTGCTCCTTTAACTTGGAATATCTTACCTCTAAGTACAAACCAATAGCTTGTCTAAGTGATTTTTCGAAGTATGCCGTTTTCGCAACACCTTCCCGTAAAGTGTATGTATACTTGTCATCCGTTTGTGATCTGGTTGACACCGTGAACGTGCCAGTCAAATCGCCGTTTTTTGATCAAGTGTTGTCGTCTAAACTAGACGATGACCTTCGGTTGTCGTGGAATTCGCCGGCATGTGCTAGGTGTGAGTCTCATGGTGGACGATGTGGCTTTCAAGTTAACTCTACTTTTAAAATTGATTGTTACAATGTTCCTCCACAACAAGGGATTTCCCGTGGTGCAAGTTACGTCATAGCCATATGTGTAGTGGTGCCATCTTTGTTGTGTTTTATTTCACTATTAAGTTGGATATGCAGCAAGTTCAGATTTGGGACTCATGGTTGGGCTTGGGCCTGGGCTCATGACACTGTGGCAGATTTTGAGGCTCTTCTTGATCCACAACAATACACCAACATTTCAGGTCTTGATAAATCTACAATTGAATCTTACCGAAAAATAGTTATAGGTGATATCATACACTTACCTAAACCTAATGGCAAAACATGCCCTATATGTTTGTCGGATTATATGCCTAAAGAAACAGTGAAAACTATGCCTGAATGTGAGCATTGTTTTCATGCACAGCGCATCGATGAATGGCTTTCACTGAATGCGTCGTGTCCAATTTGTCGAACTTCTCCTACATGA 1146 0.3874 MNFPNPMLILICFLFLFNLHQLHIVVAQATIETCLDNFCHTNQPLIRFPFHIEGKQAKTCGYPGFKVSCNENENIQTLLNLPYMEKLKIQKINYAKQELLVNDPNNCLPKQLLSLNLSSSPFDAVYYQQFTFFNCSFNLEYLTSKYKPIACLSDFSKYAVFATPSRKVYVYLSSVCDLVDTVNVPVKSPFFDQVLSSKLDDDLRLSWNSPACARCESHGGRCGFQVNSTFKIDCYNVPPQQGISRGASYVIAICVVVPSLLCFISLLSWICSKFRFGTHGWAWAWAHDTVADFEALLDPQQYTNISGLDKSTIESYRKIVIGDIIHLPKPNGKTCPICLSDYMPKETVKTMPECEHCFHAQRIDEWLSLNASCPICRTSPT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03827 381 SUPERFAMILY RING/U-box 334 379 - -
Trre5g03827 381 Pfam Wall-associated receptor kinase galacturonan-binding 34 103 IPR025287 GO:0030247
Trre5g03827 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 381 IPR013083 -
Trre5g03827 381 ProSiteProfiles Zinc finger RING-type profile. 335 377 IPR001841 -
Trre5g03827 381 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 380 IPR046948 -
Trre5g03827 381 Pfam Ring finger domain 334 377 IPR001841 -
Trre5g03827 381 Pfam Wall-associated receptor kinase C-terminal 181 235 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03827 Trre-Chr5 38843380 38846080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03827 32 381 C3H Transcription Factor Family AT2G46495 34.078 4.35e-61 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03827 - - gmx:100818969 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03827 5 38843380 38846080 Trre5g03827 5 38843380 38846080 ECH