Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03809 ATGACTTTTCAGCAGGATAAATTTGTTAGATTTCAGGACTGGAGTTCAGAGGTTAACTCTCCTGGAATTCACGTAACGCAGTCAGGGAGAATCAGAACTACACTAAAAACAGTTTCCAGGAAGTTTCAAAGGGGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAAGAGATATATGTCTTCATACTTCTTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGGTGGTGATTCTATTTATCATTCCGAAGCTCAGAGGATCAGAATCACTGAACACAAAAAACTTGCTGAAATTTTGTGTCTTCTTCCAATATGTGCCACGGTTTATACGAATAGTTCCACTATATAAAGAAGTTACAAGGACATCGGGCATTCTCACTGAAACAGCATGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTTGCAAGTCATGTTCTTGTTGCAATTGCAACATTCCTGAATGCTTCATGCCCAATACAGAGTCCAAATACAACACTCTTTAATTTTGGAATTTTCCTTGATGCACTTCAATCTGGAGTTGTTGGGTCAACAGACTTCCCACAGAAATTTTTTTATTGTTTTTGGTGGGGTCTAAAGAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCTTTGTTTGGGAAATCTGCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAATCAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGACGCAGAACAGTGGATGTCTCATCGACTACTCCCTGATAGCTTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGAGTTGATGAAGACAATTTGATTCGCAATCTTCCCAAGGATTTAAGGAGGGACATTAAGCGTCATCTCTGCTTGGCTTTGCTGATGAGGGTACCAATATTTGAGAAAATGGATGAGCAGCTTTTGGATGCAAAATGGCACAAGGAAGACTCGGGTGCCCGAGAGACTACCTCCCATGATGCTCCAGAAGCCTGCTGA 1071 0.4118 MTFQQDKFVRFQDWSSEVNSPGIHVTQSGRIRTTLKTVSRKFQRGGVLVEDSWAIAKRYMSSYFLIDILAVLPLPQVVILFIIPKLRGSESLNTKNLLKFCVFFQYVPRFIRIVPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLVAIATFLNASCPIQSPNTTLFNFGIFLDALQSGVVGSTDFPQKFFYCFWWGLKNLSSLGQNLATSTFVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPIFEKMDEQLLDAKWHKEDSGARETTSHDAPEAC 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03809 356 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 157 335 - -
Trre5g03809 356 FunFam Cyclic nucleotide-gated ion channel 1 251 315 - -
Trre5g03809 356 Pfam Ion transport protein 35 251 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre5g03809 356 Gene3D - 33 248 - -
Trre5g03809 356 SUPERFAMILY Voltage-gated potassium channels 55 246 - -
Trre5g03809 356 Gene3D Helix hairpin bin 250 315 - -
Trre5g03809 356 SUPERFAMILY cAMP-binding domain-like 253 334 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03809 Trre-Chr5 38711621 38717810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03809 39 335 Ion Channels AT5G53130 76.119 2.84e-179 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03809 K05391 - gmx:100817516 519.235