Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03804 ATGGTATGCGGAAGGTGTGTGAGTTCTATTTTTCTTCGAGCTGCAAAGAGATTGCAATTCAATCACGTTGTTGTTGTTGATGTTGGGAGAAACTGTTTAACAACAAGAATTCATCCACATCCACATCCACAATTTGTTGATTATTTTCCTAATCGTGTTTTTAATAGATACATAGGGATGATGGTTGATACAGCAGGTTCTATGTCAACAAGGGCTGGTCCCTCTGTCGATATGGTTTCACAGAAAGATGATGATACTGCTCGTTCTGGTTTTGTTACTGGTGGATGGAAAAGTGAAGATGAAAAACTTAGCTGCGGGTATTCAAGCTTTAGGGGGAAGAGAGTGACCATGGAGGATTTCTATGATATTAAGACATCAATCATTGATGGTCGTTCAGTGTGCTTATTTGGAATATTTGATGGTCATGGCGGTTCTCGTGCTGCTGAGTATTTGAAGGATCATTTATTTGAGAATCTCATGAAGCATCCAAAGTTTTTGACGGACACCAAGTTGGCTATAAGTGAAACATATCAGCAGACCGATGCTGCATTTCTGGACTCTGAAAAAGATAATTTCCGGGATGACGGTTCTACTGCTTCAACCGCTGTTTTGGTTGATAACCATCTTTATGTTGCCAATGTTGGAGATTCTAGAACTGTAATATCAACAGCTGGAAAAGCAATTGCTCTCTCTGAGGATCATAAACCTAATAGAAGTGACGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCATTTGGCAACCGTATGCTGAAGCCATTTGTTGTAGCTGAACCTGAAATCCAGGACCAGGAGATAGATGAAAAAACTGAGGTGCTTGTTCTTGCAAGCGATGGAGTCTGGGATGTAGTACAGAATGAGGATGCTGTTTCTCTTGCACGTGCGGAAGATGCAGCTGAGGTAGCTGCTCGTAAGTTAACAGAAGCTGCTTTTAATCGCGGCAGTGCAGATAACATTACTTGCATTGTGGTACGATTCAATCATGAAAAAAGACACCCAGCTAATCCTGATAAAACCGGTCCAGCTAGCAGTCAGCAGAAGTAG 1116 0.4256 MVCGRCVSSIFLRAAKRLQFNHVVVVDVGRNCLTTRIHPHPHPQFVDYFPNRVFNRYIGMMVDTAGSMSTRAGPSVDMVSQKDDDTARSGFVTGGWKSEDEKLSCGYSSFRGKRVTMEDFYDIKTSIIDGRSVCLFGIFDGHGGSRAAEYLKDHLFENLMKHPKFLTDTKLAISETYQQTDAAFLDSEKDNFRDDGSTASTAVLVDNHLYVANVGDSRTVISTAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQEIDEKTEVLVLASDGVWDVVQNEDAVSLARAEDAAEVAARKLTEAAFNRGSADNITCIVVRFNHEKRHPANPDKTGPASSQQK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03804 371 SUPERFAMILY PP2C-like 101 352 IPR036457 -
Trre5g03804 371 SMART PP2C_4 94 348 IPR001932 -
Trre5g03804 371 FunFam Probable protein phosphatase 2C 76 96 356 - -
Trre5g03804 371 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
Trre5g03804 371 ProSiteProfiles PPM-type phosphatase domain profile. 104 350 IPR001932 -
Trre5g03804 371 Gene3D - 95 359 IPR036457 -
Trre5g03804 371 SMART PP2C_SIG_2 100 350 IPR001932 -
Trre5g03804 371 PANTHER PROTEIN PHOSPHATASE 89 350 IPR015655 GO:0004722|GO:0006470
Trre5g03804 371 CDD PP2Cc 104 350 IPR001932 -
Trre5g03804 371 Pfam Protein phosphatase 2C 106 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03804 Trre-Chr5 38649154 38655618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03804 1 369 PP2C-type Phosphatase Gene Family AT5G53140 63.228 4.17e-164 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03804 K17506 - gmx:100805795 521.931