Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03793 ATGTTTGTCTCTGATACTCCTCCCTACTGGCTACACCCATATAAAAATGATGATGTTTTTGGATGGGAGAAGATTATCAAATATACCAAAATGCAAGTTTGTCATTTCCCACAGAATACTGCTGCAGGGGTTATCCGGAACATGAAGAAAATCAAAATTAGGACCAGACATAACGAAGATAACACGGAGTGCACAATCAACTCTTACCAAAGAGTTAAAAATGGACCAATTGAAATGTATATGACTACTGGATGGTATGAATTTGCTAGAGCGGACAATCTTCAGCAGGGAGACAAATTACAATTTCAACTTTCCGATCCTCCTGATTTTGTGGTTATTGATATTGTTCGCAAGCTGACAACTAATTGA 369 0.3767 MFVSDTPPYWLHPYKNDDVFGWEKIIKYTKMQVCHFPQNTAAGVIRNMKKIKIRTRHNEDNTECTINSYQRVKNGPIEMYMTTGWYEFARADNLQQGDKLQFQLSDPPDFVVIDIVRKLTTN 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03793 122 Pfam B3 DNA binding domain 50 116 IPR003340 GO:0003677
Trre5g03793 122 Gene3D - 15 119 IPR015300 -
Trre5g03793 122 SUPERFAMILY DNA-binding pseudobarrel domain 74 114 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03793 Trre-Chr5 38416245 38417378 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g03793 B3 3.1e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03793 - K07045 tpra:123886203 118.242