LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g03791	ATGGAAGATTCAAAGAACTTAATACAAGAGCTTCTACAAGGAATGGAGTTGGCAAGACAACTTCGAATCTATCTCAATGTGTCTTCTTCTTCCAATGAAACACGTGAACTTTTGATAGAGAAAATCATATCGACATTTGAAAAAGCACTTGAAATGGTGAACTACAAAGGACATGTTATTGTGGGTGAATCATCACAGCAAAAACAGAAACACACCTCAGAGACAGTTGCAATTCGAATGTTAGATTCACCACCTTTGAGCTCTAGTCCACGAAGTGAAGAGTCTGACAGAGATCACAATACTCCCAGAAAAAGAAGCACTAGTCTACCAATTAGATGGACAAAACAAATTCAAGTTTCACCAGGAATGGCAGTGGAAGGGCCTCTTGATGATGGATATAGTTGGAGAAAATATGGCCAAAAAGACATTCTTGGCGCCACACATCCAAGAGGCTATTACCGTTGCACTCATAGAAATGTTAAAGGTTGTTTGGCAACAAAACAAGTACAAAGATCCGATGAAGATCCAACTATCTTCGAAATCACTTACCGAGGAAACCATACATGTACAATGGCTTCATTAAATCCAATTGAAAACCAAGAAACAAATATTGTAAACACAAATCCTCAAAGCTTTGATCACGAGAAACCAAACGAACACCGTTTGAACAACCTACGAACAAGTCTAAGAGTCCAAACAGAGAACCTAGATTTCCTCAACCAATCATTTGCTCCTTTAATCCATTTACCTTCAACTTCAGAACTCAAATTTGAAAACCATGTACTCGAAAGTAGCTATGCCGAAAACTTCAATTCTCCTACGTATGTTTCCCCTGCGAATTCCGGAATAGGTCACTTCTCGATGTCTCCAAGTCCAAGCGGGTTTTCGAATGTGGCAAGTGACATGATCCCTCTCGCTACTTCTGCTGCAAATACACCAACCACTACTTTAGATTTTCCATTTGACCAATTTCAATTTGATGGCCAGAACTTCACATTCAATCACTCTCCATTTTTCCCTTAA	1023	0.392	MEDSKNLIQELLQGMELARQLRIYLNVSSSSNETRELLIEKIISTFEKALEMVNYKGHVIVGESSQQKQKHTSETVAIRMLDSPPLSSSPRSEESDRDHNTPRKRSTSLPIRWTKQIQVSPGMAVEGPLDDGYSWRKYGQKDILGATHPRGYYRCTHRNVKGCLATKQVQRSDEDPTIFEITYRGNHTCTMASLNPIENQETNIVNTNPQSFDHEKPNEHRLNNLRTSLRVQTENLDFLNQSFAPLIHLPSTSELKFENHVLESSYAENFNSPTYVSPANSGIGHFSMSPSPSGFSNVASDMIPLATSAANTPTTTLDFPFDQFQFDGQNFTFNHSPFFP	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g03791	340	SMART	WRKY_cls	129	191	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre5g03791	340	SUPERFAMILY	WRKY DNA-binding domain	127	191	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre5g03791	340	ProSiteProfiles	WRKY domain profile.	124	192	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre5g03791	340	MobiDBLite	consensus disorder prediction	63	109	-	-
	Trre5g03791	340	MobiDBLite	consensus disorder prediction	91	105	-	-
	Trre5g03791	340	Gene3D	WRKY domain	116	192	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre5g03791	340	FunFam	WRKY transcription factor 53	115	192	-	-
	Trre5g03791	340	Pfam	WRKY DNA -binding domain	130	189	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre5g03791	340	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	3	290	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g03791	Trre-Chr5	38359428	38361051	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g03791	2	239	WRKY Transcription Factor Family	AT5G24110	37.262	8.09e-48	161

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Trre5g03791		WRKY	4e-27	CL0274