Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g03790 | ATGGATGATACCTTATATGACATTTTTGAAGACAGAACAGAATTTGGAAACAGCAACAGTTTTAGTATAGCAGATGATGATCTTTTTGCCATTTTAGAGAGTCTAGAAAATTTCACTGATTTTCCTCTCATCAACCATGAAGCTGAAGCTGTTACTCCAAAAGAAAATGAGGACAGTTCTACCTCAAGATTGGTGTCTCAGAAATCAACATCTTCACTTCAAGATTCTGAAACTGAACTTGAAACAGAACACAAAAGCAAGAGACAGAAGCTTACACCTACTTTGTTAGAGGAACAGATTAACAATGTTGGACAACAAAGAGTTTCTCATATTACTGTGGAGCGAAACAGAAGAAAGCAAATGAATGAACATTTGTCTGTTTTAAGGTCTCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGTGTAGTTGATTACATCAATGAGTTGCAACAACTACTCCAAGCTCTTGAAGCAAAGAAACAAAGAAAAGTATATAGTGAAGTACTAAGTCCAAGACCTTCACCATTAAGTCCAAGGTTAATTTCAAGTCCAAGACCTTCACCACTAAGTCCAAGAAAACCACCTCTAAGTCCTAGACTAAACCTACCAATTAGTCCAAGAACTCCACAACCAAGTAGCCCTTATAAGCCAAGATTACAACAAAGCTACATTGCACTTTCACCTCTTGATCCATCTCCTACCACTTCCTCTGCTTCCTCTGTCAATGATAATATCAATGAGCTTGTTGCAAATTCAAAGTCACCTATTGCTGATGTTGAGGTCAAGTTTTCAGGTCCTCATGTTCTTTTGAAAACTGTGTCTCAAAGAATTCCAGGTCAAGCTTTGAAGATTATATCTGCACTTGAAGATCTTGCACTTGAAATTCTCCATGTTAACATTAATAGTACTTCTGATGATACCATGATGAATTCCTTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCGGAAGAACTAGCTCAACAAATTCAGCAAACATTCTGCTAA | 1032 | 0.3711 | MDDTLYDIFEDRTEFGNSNSFSIADDDLFAILESLENFTDFPLINHEAEAVTPKENEDSSTSRLVSQKSTSSLQDSETELETEHKSKRQKLTPTLLEEQINNVGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQALEAKKQRKVYSEVLSPRPSPLSPRLISSPRPSPLSPRKPPLSPRLNLPISPRTPQPSSPYKPRLQQSYIALSPLDPSPTTSSASSVNDNINELVANSKSPIADVEVKFSGPHVLLKTVSQRIPGQALKIISALEDLALEILHVNINSTSDDTMMNSFTIKIGIECQLSAEELAQQIQQTFC | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g03790 | 343 | MobiDBLite | consensus disorder prediction | 51 | 93 | - | - | |
Trre5g03790 | 343 | MobiDBLite | consensus disorder prediction | 57 | 76 | - | - | |
Trre5g03790 | 343 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 105 | 156 | IPR011598 | GO:0046983 | |
Trre5g03790 | 343 | PANTHER | TRANSCRIPTION FACTOR FAMA | 4 | 342 | IPR044283 | GO:0003700|GO:0010052 | |
Trre5g03790 | 343 | SMART | finulus | 111 | 162 | IPR011598 | GO:0046983 | |
Trre5g03790 | 343 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 105 | 172 | IPR036638 | GO:0046983 | |
Trre5g03790 | 343 | CDD | bHLH_AtFAMA_like | 109 | 181 | - | - | |
Trre5g03790 | 343 | MobiDBLite | consensus disorder prediction | 184 | 220 | - | - | |
Trre5g03790 | 343 | FunFam | Transcription factor SPEECHLESS | 97 | 171 | - | - | |
Trre5g03790 | 343 | MobiDBLite | consensus disorder prediction | 77 | 92 | - | - | |
Trre5g03790 | 343 | Coils | Coil | 149 | 173 | - | - | |
Trre5g03790 | 343 | Gene3D | - | 97 | 170 | IPR036638 | GO:0046983 | |
Trre5g03790 | 343 | Pfam | Helix-loop-helix DNA-binding domain | 106 | 157 | IPR011598 | GO:0046983 | |
Trre5g03790 | 343 | MobiDBLite | consensus disorder prediction | 174 | 224 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g03790 | Trre-Chr5 | 38355037 | 38357702 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g03790 | 1 | 323 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G53210 | 50.838 | 3.72e-90 | 272 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Trre5g03790 | HLH | 8.6e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g03790 | K20558 | - | gmx:100777437 | 429.483 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre5g03790 | 5 | 38355037 | 38357702 | Trre5g03790 | 5 | 38355037 | 38357702 | ECH |