Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03785 ATGGATAATCAACAAAATCAGAGTAAACAGAGTATCCTATGCAAATACACAGAACACCACACTGTTACAAAAAAACTCATCACAACAACAAAGAAAAACAACAGCAACAACAACAACAACACAACCATAAACCCAAGAGTTGTACGAGTATCTTTCACCGACCCTGACGCAACCGACTCATCCGGCGATGAAAGAGAAACACAACCATTCTTCAGAAACAGAACAAAGCGTTATATAAACCGTATTGAAATTGAAACCACTGCAAAACCAACCGTCAATAGAAAAAGATCTGCCGGAGAAGCATCTGTTAAACGGCCGGTGAAGGTTCCTATTGTCAACAACGGTAAAAAGTTCCGCGGTGTACGGCAAAGACCGTGGGGAAAATGGGCGGCGGAGATTAGAGATCCTGCGAGAAGGGTTCGTCTTTGGTTAGGTACTTTTGAAACTGCAGAAGAAGCAGCCATGGTTTACGACAATGCTGCTATTAAGCTTCGTGGACCAGACGCTTTAACAAACTTTGGTACACCGCCGCAGAAAGAAATTCCGGTAGAACCCACCACCGTGAAACAAGAAATGAAACCAGAAATGAAGGTAGTTGTGGAACAAGAAACCGAAGCTTGTGGTTCTGGTAACTCCGGTTACGATTCCGGTGAAGAACGTTGTGTTCCACTTTCATCACCGACTTCTGTTTTAAATTTCCGGTCTAACTCCGGCGAGTCACAAGAATCGGAGGAAAAAAGTGAAGTTGTTCTAGGAGAGTGTGAAGGTGAAACAAATTTATTCAATGAAACGGCGTCGTTTTTTCAATCTGATATGCCATCTTGGGATGACGTGTTCAATTTCGAAACTCCAGAGTTTCCTTCTTTGTTGTTTGAAGAAGAAGAACAGAACAAAATGATGTTTGGTGAAAATACGACGCCGTTTTTGTTTGATGATGAAGTTTTAAATGACAACAACATTGTTCTTGCTGACTCACTCATTGATTTTGACAAAGCATGTTTTCCTTCTTCACCTTCTTCTTTCTGCCAAGTGGATGATTTCATTCAAGATATTTTGTTAGCCTCAGATCCTCTCGTTGTTACTTGA 1086 0.4134 MDNQQNQSKQSILCKYTEHHTVTKKLITTTKKNNSNNNNNTTINPRVVRVSFTDPDATDSSGDERETQPFFRNRTKRYINRIEIETTAKPTVNRKRSAGEASVKRPVKVPIVNNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFGTPPQKEIPVEPTTVKQEMKPEMKVVVEQETEACGSGNSGYDSGEERCVPLSSPTSVLNFRSNSGESQESEEKSEVVLGECEGETNLFNETASFFQSDMPSWDDVFNFETPEFPSLLFEEEEQNKMMFGENTTPFLFDDEVLNDNNIVLADSLIDFDKACFPSSPSSFCQVDDFIQDILLASDPLVVT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03785 361 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 44 268 - -
Trre5g03785 361 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Trre5g03785 361 PIRSF PTI6 12 244 IPR017392 GO:0003700
Trre5g03785 361 PIRSF PTI6 218 348 IPR017392 GO:0003700
Trre5g03785 361 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Trre5g03785 361 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Trre5g03785 361 CDD AP2 116 173 IPR001471 GO:0003700|GO:0006355
Trre5g03785 361 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Trre5g03785 361 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Trre5g03785 361 MobiDBLite consensus disorder prediction 203 222 - -
Trre5g03785 361 SUPERFAMILY DNA-binding domain 117 174 IPR016177 GO:0003677
Trre5g03785 361 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Trre5g03785 361 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03785 Trre-Chr5 38138360 38139445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03785 14 354 AP2-EREBP Transcription Factor Family AT4G27950 39.891 1.09e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre5g03785 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03785 - - gmx:100807598 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03785 5 38138360 38139445 Trre5g03785 5 38138360 38139445 ECH