Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03774 ATGGACAAGAACCTATTTCTCTTGTTCATGTTTTCAGCAGTGTTGATTAGTATTGAAGCTGAACCAGTAGAAGATAAACAAGCTTTACTTGATTTCCTTAACAAAATGAATCATTCTCCACATCTTAATTGGGATGAGAATTCTTCTGTATGCCAAACATGGAGAGGAGTTACCTGCAACACTGATGGAACTCGAGTTATTGCGATTCGGTTGCCTGGAGCCGGGTTAACCGGTTCAATTCCACCAAACACTCTCGCTCGTCTTTCGGCTCTCGAGACTGTGAGTCTTAGATTAAATGGTATTACTGGTTTTTTCCCTGATGATTTCTCTGAGCTGAAAAACTTGACTAGTCTTTATCTTCAATCTAACAAGTTTTCTGGACCATTGCCATTGGATTTTTCTGTTTGGAGTAATCTTTCTGTTCTTAATTTGTCCAACAATTCTTTTAATGGTAGCATCCCTTTTTCGATTTCTAATCTAACTCATCTCGGTTCATTAGTCCTTGCGAATAACTCTCTTTCTGGTGAGATTCCTGATCTTAATATTCATAGCCTTCATTTGCTGAATTTAGCAAACAATAACCTTAGTGGTGTTGTGCCGAAATCACTTCTTAGATTCCCGAGTTCGGCTTTTTCTGGTAACAATCTTACATCAAATACTAGTAGTACACTTCCTCCGGCTTTTCCTATGCATCCACCTTATAATTTTCCACCGAAAAAATCCAAAGGACTAAGTGAAACGGCATTATTGGGAATCATCATCGGTGTTTGCGCACTTGGATTTGCAGTGATTGCAGTTGTCATGATTTTATGCTGCTATGACTTTGCTTCTTCTGGTGTAAAAGAATCCGTACAATCGAAGAAAAAAGAAGTATCTATGAAAGCAGAATCTTCAGCGAGTCGAGATAAAAACAAAATAGTATTTTTTGAGGATTGTAATCTTGCATTTGATTTAGAGGACCTTTTGAGAGCTTCTGCCGAGATTCTCGGAAAGGGTACATTTGGAACAACATATAAGGCTGCTTTAGAAGATGCAACTACCGTAGCGGTGAAGAGGTTGAAAGAGGTAACTGTCGGGAAAAGGGAATTCGAACAGCAGATGGAAGTGGTTGGGAAAATTAAGCATGAAAATGTGGATACATTAAGAGCTTATTATTATTCAAAGGATGAGAAACTAGTAGTATCTGATTATTATCAACAAGGCAGTGTTTCTTCCATCTTACATGGCAAAAGAGGGGAAGGAAGGACAAATCTAGACTGGGATAGCCGTTTAAAGATTGCGATCGGTACAGCAAGAGGCCTTGCTCACATACATACTCAACAAGGAGGAAAACTAGTTCATGGAAACATAAAAGCCTCGAACATCTTCCTAAACTCACAAGGATATGGTTGCATATCCGACATAGGTTTGGCAACATTGATGAGTTCAATACCTCCACCAGGCACAAGAGCAATGGGATACCGTGCGCCAGAAGTAACCGACACACGTAAAGCGATGCATCCGTCTGATGTATACAGTTTCGGTGTCCTATTACTTGAACTTCTAACTGGGAAATCACCTATATATTCTTCGGAAGGTGAACAAATTGTTCACTTGGTTAGATGGGTGAATTCTGTGGTCAGAGAGGAATGGACTGCAGAGGTTTTCGATGTCGAGCTTTTGCGGTACTCACATGTAGAGGAAGAAATGGTGGAGATGCTACAAATAGGGATGGCTTGTGCAGCAAGAATGCCAGATCAAAGACCAAAGATGTCTGAAGTTGTGAGAATGATGGAAGCGATTCGTCCCGAAAATCGACCATCGTCTACCGAGTCTAGATCAGAAGTTTCTACTCCAACTATTTATGTAACTTAA 1854 0.4002 MDKNLFLLFMFSAVLISIEAEPVEDKQALLDFLNKMNHSPHLNWDENSSVCQTWRGVTCNTDGTRVIAIRLPGAGLTGSIPPNTLARLSALETVSLRLNGITGFFPDDFSELKNLTSLYLQSNKFSGPLPLDFSVWSNLSVLNLSNNSFNGSIPFSISNLTHLGSLVLANNSLSGEIPDLNIHSLHLLNLANNNLSGVVPKSLLRFPSSAFSGNNLTSNTSSTLPPAFPMHPPYNFPPKKSKGLSETALLGIIIGVCALGFAVIAVVMILCCYDFASSGVKESVQSKKKEVSMKAESSASRDKNKIVFFEDCNLAFDLEDLLRASAEILGKGTFGTTYKAALEDATTVAVKRLKEVTVGKREFEQQMEVVGKIKHENVDTLRAYYYSKDEKLVVSDYYQQGSVSSILHGKRGEGRTNLDWDSRLKIAIGTARGLAHIHTQQGGKLVHGNIKASNIFLNSQGYGCISDIGLATLMSSIPPPGTRAMGYRAPEVTDTRKAMHPSDVYSFGVLLLELLTGKSPIYSSEGEQIVHLVRWVNSVVREEWTAEVFDVELLRYSHVEEEMVEMLQIGMACAARMPDQRPKMSEVVRMMEAIRPENRPSSTESRSEVSTPTIYVT 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03774 617 ProSiteProfiles Protein kinase domain profile. 323 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03774 617 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 398 605 - -
Trre5g03774 617 PANTHER OS05G0588300 PROTEIN 6 603 - -
Trre5g03774 617 Gene3D Ribonuclease Inhibitor 23 234 IPR032675 -
Trre5g03774 617 MobiDBLite consensus disorder prediction 598 617 - -
Trre5g03774 617 ProSitePatterns Protein kinases ATP-binding region signature. 329 360 IPR017441 GO:0005524
Trre5g03774 617 FunFam Probable inactive receptor kinase RLK902 22 181 - -
Trre5g03774 617 Gene3D Phosphorylase Kinase; domain 1 287 397 - -
Trre5g03774 617 SUPERFAMILY Protein kinase-like (PK-like) 327 592 IPR011009 -
Trre5g03774 617 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Trre5g03774 617 SUPERFAMILY L domain-like 39 208 - -
Trre5g03774 617 MobiDBLite consensus disorder prediction 594 617 - -
Trre5g03774 617 FunFam pollen receptor-like kinase 1 292 397 - -
Trre5g03774 617 Pfam Protein tyrosine and serine/threonine kinase 327 590 IPR001245 GO:0004672|GO:0006468
Trre5g03774 617 Gene3D Transferase(Phosphotransferase) domain 1 398 613 - -
Trre5g03774 617 Pfam Leucine rich repeat 79 125 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03774 Trre-Chr5 37829050 37831498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03774 14 613 Receptor kinase-like Gene Family AT4G23740 57.327 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre5g03774 Pkinase 3.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03774 - - gmx:100813065 919.842