Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03763 ATGCTTGACTTGCACAAAAATGAGCTTCAAGGAACCATTCCTTCCTCATTAAAATTCTTAGACGGTCTTAATGTCTTAGATCTTTCGGCAAACAGAATCACTGGAAGCATTCCTAGGAGTTTTGGCGAGCTTACATCGTTAAATAAGTTGATTCTAAGTGGAAACCTTATCACCGGTTCGATCCCTCAATCACTAGGACTTTGTAAGGATTTGCAGTTGTTGGATTTAAGTAACAATAAGATCATAGGTTCTATTCCCAATGAGATTGGTTACTTGCAAGGATTGGATATTCTCTTGAACTTGAGTTGGAATTCTCTTACTGGTCCCATACCAAAAACTTTCTCAAATCTCTCAAAACTTTCAATCTTGGACCTATCTTACAACAACCTCAAAGGTAGTCTCATAGCACTTAGTAATCTTGATAATCTTGTGTCTCTAAATGTTTCATACAATAGTTTTTCTGGTACACTTCCCGACACAAAGTTCTTCCAAGAACTACCTTCTGCTGCATTTGCTGGTAACCCTGATCTTTGCATTAACAAGTGCCATGTAAGTGGAAATCTCCGAGGAAACAAGTCGTTAAGAAATATTATTATCTACACATTCCTTGGTGTTATTTTAACTTCTGCTATTGTCACTTGTGGAGTTATTTTAGCATTAAGGATTCAAGGAGATAGTTTTTATGGGAATAATAGTTTTGAAGAAGTTGAAATGGAATGGTCTTTCACTCCATTCCAAAAATTTAACTTCAACATCAATGACATTCTCACAAAGTTGTCGGATTCAAACATTGTCGGAAAGGGTGGCTCAGGAGTTGTTTATCGCGTAGAGACACCAACAAGGCAGGTTATTGCAGTGAAGAAGCTATGGCCAATAAAGAATGAAGAGACACCAGAGAGAGATATGTTTACAGCAGAAGTTCAGACACTTGGATCAATAAGGCATAAGAATATAGTGAGACTTTTAGGATGCTGCGAAAATGGAAAAACTAAATTGCTCTTGTTTGATTACATAAGTAATGGTAGTTTGTTTGGATTGTTACATGAAAGTAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTTGGAACAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCATCGCGATGTTAAGGCTAACAACATCTTGGTAGGTCCACAGTTTGAAGCTTTTCTCGCAGATTTTGGTCTTGCAAAATTGGTCATTTCCTCAGAGTGTTCAAGAGCCTCCCATGTAGTTGCAGGTTCTTGTGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTATACAGTTACGGCATTGTGCTTCTCGAGATGCTAACTGGAATGGAACCGGCGGATAACAGGATTCCCGAAGGCGCTCACATAGTAACATGGGTTATCAGTGAAATCAGAGAGAAGAAAAGAGAATTTGCATCAATTCTTGATCAGCAATTAGTAGTGCAGTGTGGAACAAGAACACCAGAGATGCTTCAAGTGTTAGGTGTAGCACTTCTTTGTGTGAATCCATCACCAGAAGAAAGACCAACAATGAAAGATGTAACAGCAATGCTGAAGGAGATTAGGCATGGAAATGAAGATTTGGATAAACCAAATATGATCCATAAAGGCAACATGGTTATTACCAATCCAAAAGCAGCAGTTCATTGTTCAAGTTTCTCAAGATCATGTGAACTTTTGATGGAATCATCATCTTCTTCATAG 1752 0.3807 MLDLHKNELQGTIPSSLKFLDGLNVLDLSANRITGSIPRSFGELTSLNKLILSGNLITGSIPQSLGLCKDLQLLDLSNNKIIGSIPNEIGYLQGLDILLNLSWNSLTGPIPKTFSNLSKLSILDLSYNNLKGSLIALSNLDNLVSLNVSYNSFSGTLPDTKFFQELPSAAFAGNPDLCINKCHVSGNLRGNKSLRNIIIYTFLGVILTSAIVTCGVILALRIQGDSFYGNNSFEEVEMEWSFTPFQKFNFNINDILTKLSDSNIVGKGGSGVVYRVETPTRQVIAVKKLWPIKNEETPERDMFTAEVQTLGSIRHKNIVRLLGCCENGKTKLLLFDYISNGSLFGLLHESRLFLDWDARYKIILGTAHGLEYLHHDCIPPIVHRDVKANNILVGPQFEAFLADFGLAKLVISSECSRASHVVAGSCGYIAPEYGYSLRITEKSDVYSYGIVLLEMLTGMEPADNRIPEGAHIVTWVISEIREKKREFASILDQQLVVQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHGNEDLDKPNMIHKGNMVITNPKAAVHCSSFSRSCELLMESSSSS 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03763 583 Pfam Protein kinase domain 262 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03763 583 SUPERFAMILY Protein kinase-like (PK-like) 255 564 IPR011009 -
Trre5g03763 583 Pfam Leucine rich repeat 99 152 IPR001611 GO:0005515
Trre5g03763 583 Pfam Leucine rich repeat 2 57 IPR001611 GO:0005515
Trre5g03763 583 SMART serkin_6 259 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03763 583 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 535 - -
Trre5g03763 583 Gene3D Phosphorylase Kinase; domain 1 228 337 - -
Trre5g03763 583 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 338 552 - -
Trre5g03763 583 ProSiteProfiles Protein kinase domain profile. 259 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03763 583 FunFam Putative LRR receptor-like serine/threonine-protein kinase 98 183 - -
Trre5g03763 583 ProSitePatterns Protein kinases ATP-binding region signature. 265 293 IPR017441 GO:0005524
Trre5g03763 583 PRINTS Leucine-rich repeat signature 117 130 - -
Trre5g03763 583 PRINTS Leucine-rich repeat signature 23 36 - -
Trre5g03763 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Trre5g03763 583 ProSiteProfiles Leucine-rich repeat profile. 70 92 IPR001611 GO:0005515
Trre5g03763 583 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Trre5g03763 583 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 235 337 - -
Trre5g03763 583 Gene3D Transferase(Phosphotransferase) domain 1 338 557 - -
Trre5g03763 583 Gene3D Ribonuclease Inhibitor 1 188 IPR032675 -
Trre5g03763 583 SUPERFAMILY L domain-like 2 178 - -
Trre5g03763 583 Pfam Leucine Rich Repeat 71 90 IPR001611 GO:0005515
Trre5g03763 583 FunFam LRR receptor-like serine/threonine-protein kinase 18 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03763 Trre-Chr5 37687340 37689397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03763 1 574 Receptor kinase-like Gene Family AT5G56040 44.073 4.44e-152 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre5g03763 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03763 - - gmx:100807225 919.842