Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03762 ATGTCAAACAATGTATTAAATTTTCTTATCTTGTTTCTCACTTTCTCTTTGTTTCCAATAAATTATTCTCTTAACCAAGAAGGTCTCTCTCTACTTTCATGGCTTTCATCTTTCAATTCTTCAAACTCTCTCACTACTACTACTACTAGCTTCTCATCATGGGATCCATCTCACAAAAATCCTTGCAGATGGGACTATATAAAATGTTCTTCAGAAGAGTTTGTCGAAGAGATTGTAATAACATCGGTTGATCTTCGTAGCCGATTCCCTACACAGTTACTTTCTTTTAACCACCTTACAACACTTGTAATCTCAAATGGAAATCTTACTGGTGAGATTCCAAGTTCAGTTGGAAACTTATCATCTTTGGTTACTCTTGATCTTAGTTTCAACACTTTAACAGGAAAAATACCACAAGAAATAGGAAAGTTATCTGAACTGAGATGGTTATCTTTGAATTCGAATTCGTTACACGGTGGAATTCCAACCACAATCGGTAACTGTTCAAAGCTTCAGCAATTAACACTGTTTGACAACCAGCTTTCCGGTATGATTCCAGGAGAAATAGGACAGTTGAAGAATCTTGAATCGCTGAGAGCTGGTGGAAACCAAGGTATTTTCGGAGAAATTCCAATGCAGATATCAGATTGTAAGGCTTTGGTTTTTCTTGGACTTGCAGTTACTGGAATTTCTGGTGAGATTCCTGCAAGTATAGGAGAACTTCAAAATCTGAAGACGCTTTCGGTTTACACAGCACATCTCACAGGTGAAATTCCACCAGAGATTCATAACTGTTCATCATTGGAAGATTTGTTTCTGTATGAAAATCAACTTTCTGGAAAAATTCCTTATGAATTAGGCTTCATGAAAAGCCTCAAGAGAGTATTGCTATGGCAGAATAATTTAACAGGAACCATTCCAGAAACTCTTGGAAACTGTACAAATTTGAAGGTTATTGATTTCTCTTTGAATTCTCTGATTGGTCAGTTACCTTATACTCTCAGTAATCTACTCTTATTGGAGGAATTTCTTTTGTCTGATAATAATATTTATGGAGAAATACCTTCATATATTGGTAATTTTTCCATGTTGAAGCAACTTGAATTAGATAATAACAAATTCTCTGGTGACATTCCATCTGTTATGGGGAACTTGAAGGAACTAACTCTCTTCTTTGCATGGCAGAATCAACTAAATGGAAGTATACCAATAGAATTATCTAACTGTCAGAAACTTGAAGCGGTTGATCTTTCGCACAATTTCCTCACTGGTCCAATTCCAAATTCTCTCTTTCATCTACGGAATTTAACTCAGTTGTTGCTGATATCAAACAGATTTTCAGGTCAAATTCCACCGGATATCGGAAGGTGCACCGGCTTGATCAGGTTAAGGCTAGGATCCAACAACTTTACCGGTCAAATTCCGCGAGAAATAGGCCTTTTGGAAAGTTTAACCTTTCTAGAATTGTCAGATAATCAACTCAGTGGAGATATACCTTATGAGATAGGTAACTGTGCTAATTTAGAAATGCTTGACTTGCACAAAAATGAGCTTCAAGGAACCATTCCTTCCTCATTAAAATTCTTAGACGGTCTTAATGTCTTAGATCTTTCGGCAAACAGAATCACTGGAAGCATTCCTAGGAGTTTTGGCGAGCTTACATCGTTAAATAAGTTGATTCTAAGTGGAAACCTTATCACCGGTTCGATCCCTCAATCACTAGGACTTTGTAAGGATTTGCAGTTGTTGGATTTAAGTAACAATAAGATCATAGGTTCTATTCCCAATGAGATTGGTTACTTGCAAGGATTGGATATTCTCTTGAACTTGAGTTGGAATTCTCTTACTGGTCCCATACCAAAAACTTTCTCAAATCTCTCAAAACTTTCAATCTTGGACCTATCTTACAACAACCTCAAAGGTAGTCTCATAGCACTTAGTAATCTTGATAATCTTGTGTCTCTAAATGTTTCATACAATAGTTTTTCTGGTACACTTCCCGACACAAAGTTCTTCCAAGAACTACCTTCTGCTGCATTTGCTGGTAACCCTGATCTTTGCATTAACAAGTGCCATGTAAGTGGAAATCTCCGAGGAAACAAGTCGTTAAGAAATATTATTATCTACACATTCCTTGGTGTTATTTTAACTTCTGCTATTGTCACTTGTGGAGTTATTTTAGCATTAAGGATTCAAGGAGATAGTTTTTATGGGAATAATAGTTTTGAAGAAGTTGAAATGGAATGGTCTTTCACTCCATTCCAAAAATTTAACTTCAACATCAATGACATTCTCACAAAGTTGTCGGATTCAAACATTGTCGGAAAGGGTGGCTCAGGAGTTGTTTATCGCGTAGAGACACCAACAAGGCAGGTTATTGCAGTGAAGAAGCTATGGCCAATAAAGAATGAAGAGACACCAGAGAGAGATATGTTTACAGCAGAAGTTCAGACACTTGGATCAATAAGGCATAAGAATATAGTGAGACTTTTAGGATGCTGCGAAAATGGAAAAACTAAATTGCTCTTGTTTGATTACATAAGTAATGGTAGTTTGTTTGGATTGTTACATGAAAGTAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTTGGAACAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCATCGCGATGTTAAGGCTAACAACATCTTGGTAGGTCCACAGTTTGAAGCTTTTCTCGCAGATTTTGGTCTTGCAAAATTGGTCATTTCCTCAGAGTGTTCAAGAGCCTCCCATGTAGTTGCAGGTTCTTGTGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTATACAGTTACGGCATTGTGCTTCTCGAGATGCTAACTGGAATGGAACCGGCGGATAACAGGATTCCCGAAGGCGCTCACATAGTAACATGGGTTATCAGTGAAATCAGAGAGAAGAAAAGAGAATTTGCATCAATTCTTGATCAGCAATTAGTAGTGCAGTGTGGAACAAGAACACCAGAGATGCTTCAAGTGTTAGGTGTAGCACTTCTTTGTGTGAATCCATCACCAGAAGAAAGACCAACAATGAAAGATGTAACAGCAATGCTGAAGGAGATTAGGCATGGAAATGAAGATTTGGATAAACCAAATATGATCCATAAAGGCAACATGGTTATTACCAATCCAAAAGCAGCAGTTCATTGTTCAAGTTTCTCAAGATCATGTGAACTTTTGATGGAATCATCATCTTCTTCATAG 3279 0.3724 MSNNVLNFLILFLTFSLFPINYSLNQEGLSLLSWLSSFNSSNSLTTTTTSFSSWDPSHKNPCRWDYIKCSSEEFVEEIVITSVDLRSRFPTQLLSFNHLTTLVISNGNLTGEIPSSVGNLSSLVTLDLSFNTLTGKIPQEIGKLSELRWLSLNSNSLHGGIPTTIGNCSKLQQLTLFDNQLSGMIPGEIGQLKNLESLRAGGNQGIFGEIPMQISDCKALVFLGLAVTGISGEIPASIGELQNLKTLSVYTAHLTGEIPPEIHNCSSLEDLFLYENQLSGKIPYELGFMKSLKRVLLWQNNLTGTIPETLGNCTNLKVIDFSLNSLIGQLPYTLSNLLLLEEFLLSDNNIYGEIPSYIGNFSMLKQLELDNNKFSGDIPSVMGNLKELTLFFAWQNQLNGSIPIELSNCQKLEAVDLSHNFLTGPIPNSLFHLRNLTQLLLISNRFSGQIPPDIGRCTGLIRLRLGSNNFTGQIPREIGLLESLTFLELSDNQLSGDIPYEIGNCANLEMLDLHKNELQGTIPSSLKFLDGLNVLDLSANRITGSIPRSFGELTSLNKLILSGNLITGSIPQSLGLCKDLQLLDLSNNKIIGSIPNEIGYLQGLDILLNLSWNSLTGPIPKTFSNLSKLSILDLSYNNLKGSLIALSNLDNLVSLNVSYNSFSGTLPDTKFFQELPSAAFAGNPDLCINKCHVSGNLRGNKSLRNIIIYTFLGVILTSAIVTCGVILALRIQGDSFYGNNSFEEVEMEWSFTPFQKFNFNINDILTKLSDSNIVGKGGSGVVYRVETPTRQVIAVKKLWPIKNEETPERDMFTAEVQTLGSIRHKNIVRLLGCCENGKTKLLLFDYISNGSLFGLLHESRLFLDWDARYKIILGTAHGLEYLHHDCIPPIVHRDVKANNILVGPQFEAFLADFGLAKLVISSECSRASHVVAGSCGYIAPEYGYSLRITEKSDVYSYGIVLLEMLTGMEPADNRIPEGAHIVTWVISEIREKKREFASILDQQLVVQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHGNEDLDKPNMIHKGNMVITNPKAAVHCSSFSRSCELLMESSSSS 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03762 1092 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 395 1044 - -
Trre5g03762 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 204 329 - -
Trre5g03762 1092 SMART serkin_6 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03762 1092 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Trre5g03762 1092 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Trre5g03762 1092 Pfam Leucine rich repeat 608 661 IPR001611 GO:0005515
Trre5g03762 1092 PRINTS Leucine-rich repeat signature 532 545 - -
Trre5g03762 1092 PRINTS Leucine-rich repeat signature 626 639 - -
Trre5g03762 1092 Gene3D Ribonuclease Inhibitor 285 381 IPR032675 -
Trre5g03762 1092 SUPERFAMILY RNI-like 329 667 - -
Trre5g03762 1092 Gene3D Transferase(Phosphotransferase) domain 1 847 1065 - -
Trre5g03762 1092 Gene3D Ribonuclease Inhibitor 186 284 IPR032675 -
Trre5g03762 1092 Gene3D Ribonuclease Inhibitor 24 185 IPR032675 -
Trre5g03762 1092 ProSiteProfiles Protein kinase domain profile. 768 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03762 1092 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Trre5g03762 1092 Gene3D Ribonuclease Inhibitor 393 694 IPR032675 -
Trre5g03762 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 744 846 - -
Trre5g03762 1092 Pfam Leucine rich repeat N-terminal domain 25 70 IPR013210 -
Trre5g03762 1092 ProSitePatterns Protein kinases ATP-binding region signature. 774 802 IPR017441 GO:0005524
Trre5g03762 1092 Gene3D Phosphorylase Kinase; domain 1 738 846 - -
Trre5g03762 1092 SMART LRR_typ_2 337 361 IPR003591 -
Trre5g03762 1092 SMART LRR_typ_2 481 505 IPR003591 -
Trre5g03762 1092 SMART LRR_typ_2 289 313 IPR003591 -
Trre5g03762 1092 SMART LRR_typ_2 553 577 IPR003591 -
Trre5g03762 1092 SMART LRR_typ_2 529 552 IPR003591 -
Trre5g03762 1092 SMART LRR_typ_2 144 168 IPR003591 -
Trre5g03762 1092 SMART LRR_typ_2 120 143 IPR003591 -
Trre5g03762 1092 SMART LRR_typ_2 649 682 IPR003591 -
Trre5g03762 1092 SMART LRR_typ_2 626 648 IPR003591 -
Trre5g03762 1092 SMART LRR_typ_2 433 457 IPR003591 -
Trre5g03762 1092 ProSiteProfiles Leucine-rich repeat profile. 579 601 IPR001611 GO:0005515
Trre5g03762 1092 Pfam Protein kinase domain 771 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03762 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 847 1061 - -
Trre5g03762 1092 ProSiteProfiles Leucine-rich repeat profile. 628 650 IPR001611 GO:0005515
Trre5g03762 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 203 - -
Trre5g03762 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 411 695 - -
Trre5g03762 1092 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515
Trre5g03762 1092 SUPERFAMILY Protein kinase-like (PK-like) 764 1072 IPR011009 -
Trre5g03762 1092 SUPERFAMILY RNI-like 83 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03762 Trre-Chr5 37687340 37690924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03762 22 1083 Receptor kinase-like Gene Family AT5G56040 46.967 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre5g03762 Pkinase 6.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03762 - - gmx:100807225 1689.09