Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03722 ATGTCGAACAACACTGCTGGTCAGGTCATCAAGTGCAGAGCTGCGGTTGCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCGCCGCCACAGGCCGGTGAAGTTCGTCTTAAGATACTCTTCACCTCCCTTTGTCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGCGAAGGTGTGACTCATCTGAAACCAGGGGACCATGCCCTGCCTGTATTCACAGGGGAGTGTGGGGAATGCCCACATTGTAAGTCAGAGGAGAGCAACATGTGTAATCTTCTTAGGATCAACACCGACAGAGGTGTCATGATCAATGACAACAAGTCAAGATTCTCTATTAAGGGACAGCCCGTACACCATTTCGTCGGTACTTCTACATTCAGCGAGTACACTGTGGTCCATGCTGGTTGTGTTGCAAAGATCAACCCTGATGCACCACTTGACAAAGTTTGTATTCTCAGCTGCGGAATATGCACTGGTCTTGGTGCTACTGTCAATGTTGCAAAACCGAAACCCGGTTCTTCTGTTGCAATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATGTCTGGTGCATCTCGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGGGTAAACGAGTTCGTCAACCCGAAAGATCATGAGAAACCTGTTCAACAGGTAATTGCTGAAATGACTGATGGAGGTGTGGATCGTGCTGTTGAATGTACCGGGAGCATCCAGGCCATGATCTCAGCATTCGAATGCGTCCATGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTTCCAAGCAAAGACGATGCATTCAAAACTCATCCAATGAATTTCTTGAATGAGAGGACTCTTAAGGGTACTTTCTATGGTAACTACAAGCCTCGAACCGATCTTCCTAATGTTGTAGAGCAATACATGAGAGGGGAGCTGGAACTTGAAAAATTCATCACTCACTCAATCCCATTTTCAGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGGGAGTCCATCCGATGTATCATCCGCATGGAGGAGTAA 1146 0.4686 MSNNTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRINTDRGVMINDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARMSGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHEKPVQQVIAEMTDGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEQYMRGELELEKFITHSIPFSEINKAFDYMLKGESIRCIIRMEE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03722 381 SUPERFAMILY GroES-like 329 378 IPR011032 -
Trre5g03722 381 SUPERFAMILY GroES-like 5 188 IPR011032 -
Trre5g03722 381 CDD alcohol_DH_plants 10 378 - -
Trre5g03722 381 Gene3D - 184 322 - -
Trre5g03722 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 344 IPR036291 -
Trre5g03722 381 PANTHER ALCOHOL DEHYDROGENASE 7 377 - -
Trre5g03722 381 Gene3D - 20 371 - -
Trre5g03722 381 FunFam Alcohol dehydrogenase class-P 184 322 - -
Trre5g03722 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Trre5g03722 381 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
Trre5g03722 381 FunFam alcohol dehydrogenase 1-like isoform X1 20 183 - -
Trre5g03722 381 Pfam Zinc-binding dehydrogenase 207 337 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03722 Trre-Chr5 37226382 37229195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03722 38 371 Monolignol Biosynthesis Gene Families AT1G72680 26.331 8.76e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03722 K18857 - gmx:100801918 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03722 5 37226382 37229195 Trre5g03722 5 37226382 37229195 ECH