Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03713 ATGGGACTCAAATTGCAAATTAAGTTATCAAACTACAAATTTGCTCTGTTCTTTCCATCAGACAACCGGCTACGGTTCATCGTCATACAAAAAGTGTTCAGAAGGAGCAACATGAGCGAGTTGTTGCGACAAATAGACTTTACACAACGCGAAAAATCAGTTAACTCATTGGTGTATAAGATCGAGGCTCGTCTAAGGGACTCTATTAAAGGCGGTTTTAATTTTGCTCACAATTTTGAACATAAGTTGAAGGAAGTTCAACAGAAAATCAAGAGTGTGAAGAGTGAACTAGCTAAATACCTCACTCCTTAG 312 0.3814 MGLKLQIKLSNYKFALFFPSDNRLRFIVIQKVFRRSNMSELLRQIDFTQREKSVNSLVYKIEARLRDSIKGGFNFAHNFEHKLKEVQQKIKSVKSELAKYLTP 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03713 103 Coils Coil 76 96 - -
Trre5g03713 103 Pfam Lateral organ boundaries (LOB) domain 14 94 IPR004883 -
Trre5g03713 103 ProSiteProfiles LOB domain profile. 1 97 IPR004883 -
Trre5g03713 103 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03713 Trre-Chr5 36965852 36966163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03713 14 103 AS2 family AT5G66870 42.222 4.39e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g03713 LOB 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03713 - - mtr:11411349 87.4261