Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03709 ATGTCAAGAGCTTTTGATTTTATTAAGGACCTTAACAAGGAAAGAGCCATATGGAAAATTGCAGTTCAAGTTGTAGACTCTTGGGTTGTTATAGGAACTAATGGCTTTCAACATCTGGAGATGATTATTGTTGATGAAAAGGGAGATCGTGTGCACGTCGTTACTCGCTATAAGGAATTTGAACACTGGAAGTCTTTTATTGAGGATCATAAGATCTATGTGTTGTACAATTGTCAAGTATATGACAATGACGCAGGATACAAACCATGTGAAGGTCCTTTCAAAATAGTGCTTGGGTCAGGTACCAATGTTAAACCAGCTCCTGAAATCACTAACATTCCTGATCAACTCTTTTGGTTCAAAAATTTCAAAGAAGTTCACGATGGGAACTTCAAAATTAACATCTTATATGAGATCATTGGGGTTCTTCATGAAGTCGTTAAAACACAAACCGTTGCATCCGGCAAAAAACCATGTACCAACTTAATCCTTACTGATGAAAGTGGCACCATGGTTGATGTCACTCTTTGGGAATCTTTCTCAACTCAACTGTCTAACTATATCGATGCTCGAAAAGACAAAGGACCAATTGTCATCATTTTGACACATGCTCAATGCAAATTAGGAGATTTATTCGCTTCAATTATTAACAATGGGAGACCCAACTTCTGTAACAATTGGTCTGGCTCTAAGCTTCTTATTAATTTTGAACATCCTTCTGTCGAAAGCTTCAAAGCATCATTCAAAGATATTTCATCAACTCAGGGTGCTACTCAAGATTTTACTCAAGTTTCATCTTCCTCTCAACTCTCCGGCAACGACATTTGGTCAAATAGAAGTCACTTTACATCAATTGCTCAAATGAGGTCCTTGCAAAAGGATACCCACTGCATCACTATTGGAACAACCAAAATGTTCAATCCTACTCAGTTTGGTTGGTACTACGAGAGCTGCTCAAAATGTACCAAATCTTCGAGAGGTCAGGTTGACAATTATACCTGTTCATGTGGTGAGCAAGTCAAAAGCGCCATTGCTAGGTTCAAAGTTGTTGTTCAAGTTGAACATCAAGGTAATAAAGCTGACTTCATCTTTTGGGACAATGAATGTCAAACCATTGTTGGCCAAACTGCCGAAGAAATTAGGGAAATCATGAAAAAGGTTTTTAATGTTTGTAAACCAAATATATCTTTTGCACGCAACTGTAGAGACTAA 1212 0.3771 MSRAFDFIKDLNKERAIWKIAVQVVDSWVVIGTNGFQHLEMIIVDEKGDRVHVVTRYKEFEHWKSFIEDHKIYVLYNCQVYDNDAGYKPCEGPFKIVLGSGTNVKPAPEITNIPDQLFWFKNFKEVHDGNFKINILYEIIGVLHEVVKTQTVASGKKPCTNLILTDESGTMVDVTLWESFSTQLSNYIDARKDKGPIVIILTHAQCKLGDLFASIINNGRPNFCNNWSGSKLLINFEHPSVESFKASFKDISSTQGATQDFTQVSSSSQLSGNDIWSNRSHFTSIAQMRSLQKDTHCITIGTTKMFNPTQFGWYYESCSKCTKSSRGQVDNYTCSCGEQVKSAIARFKVVVQVEHQGNKADFIFWDNECQTIVGQTAEEIREIMKKVFNVCKPNISFARNCRD 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03709 403 Gene3D - 263 397 IPR012340 -
Trre5g03709 403 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Trre5g03709 403 Gene3D - 111 259 IPR012340 -
Trre5g03709 403 SUPERFAMILY Nucleic acid-binding proteins 120 249 IPR012340 -
Trre5g03709 403 PANTHER OS03G0429900 PROTEIN 7 387 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre5g03709 403 SUPERFAMILY Nucleic acid-binding proteins 287 385 IPR012340 -
Trre5g03709 403 Gene3D - 4 106 IPR012340 -
Trre5g03709 403 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03709 Trre-Chr5 36885326 36887155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03709 1 383 Core DNA Replication Machinery Family AT5G08020 20.352 7.55e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03709 - - tpra:123885385 572.392