Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03700 ATGGAAACAAATTCACTGTGCTTTCTTCTTCTTCAAAGATCATATACACTTTCCTCAGTAACTTTGATCCCTCCTTCATATAAGAGATCAATTGAAGCATATAGTGCTTCTTCTTACCAGCTAATAGGTAGTTCAGGAGCTTCATTGGTTGCTAAGAAACAATTTGATACTTGTTTCGGATCAGATTTTATTATGGAAAATCGAAGCGTGGATTCAATTGAAGTTGATGGTGTAATGAGATCAAAACTAGAAGCATTGGAGAGAGCATTACTTGATGATAGTGACATTGAGGTGGAAGAAGAATATGTGATTTCTCAAAGCATGGAAATTGATCCTAACATTATCGATTGGGCTGATCCGGATCCAATACAGAATATGCTACTCCGTGACTCACCAAAGGAATATTCATCTTCAGATTCCAATATTAGCAGCATCAGCAGAGAAATACCAAAAAATTCTAGGACCCCCAAGCAATTGCTATATGAATGTGCTACCGCAATTTCAGAAGGAAATGAAGAGGGAGCATCGTTGATGATAAACGTTCTTCGGCAGATGGTCTCAATTCAAGGAGAGCCTTCTCAAAGAATTGCAGCCTATATGGTGGAGGGACTTGCCGCTCGCCTCGCTGAATCCGGAAAAAGTATTTATAGAGCTTTAAAATGTAAGGAACCTCCTTCTTTGGACCGTTTAGCAGCGATGCAGATACTTTTTGAGGTCTGTCCGTGTTTTAAATTCGGGTTTATTGCTGCTAACAGTGCAATTTCCGAAGCAGTTAAAGATGAAATTAAGATTCATATAATAGATTTTGACATCAATCAAGGAAGTCAGTATATAAATCTTATTCAAACACTTGCTTCGAGGTCTATTAAGCCGTCCCATGTTAGATTGACTGGCATTGATGATCCTGAGTCCGTGCAGCGATCCCTCGGAGGACTAAAGATCATAGGACAAAGACTTGAACAACTAGCAGAAACACTTGGTTTGTCATTTGAATTTCGAGCAGTCGCATCAAGGACTTCAATTGTTACTTCATCGATGCTTAATTGTCGTCAAGGAGAAGCTCTTGTGGTGAATTTTGCATTCCAGCTTCATCATATGCCTGATGAGAGTGTTTCAACAGTAAACGAACGAGACCAACTTCTTCGTTTGGTAAAGGGTTTGAATCCGAAGCTTGTAACGGTCGTGGAGCAAAATGTAAACACCAATACTACCCCTTTCTTGCAAAGATTTGTTGAAGCTTACAATTACTATTCGGCTGTGTTTGAGTCGCTTGATGTTACTCTTCCTAGAGAGAGTCAAGATAGGATGAATGTAGAGAGGCAATGCTTAGCAAGGGACATTGTTAATACAGTTGCGTGTGAAGGCGAGGATCGGATAGAACGATATGAAGTCGCAGGAAAATGGAGAGCTAGGATGACAATGGCTGGCTTCATTTCATCTCCAATGAGCACTAACGTGAGCGATGAAATACGAAAACTCGTTAAGGCGTATTGTGATAGGTACAAGATAAAAGAGGAAAAGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGCTTGGAAGTGA 1581 0.4004 METNSLCFLLLQRSYTLSSVTLIPPSYKRSIEAYSASSYQLIGSSGASLVAKKQFDTCFGSDFIMENRSVDSIEVDGVMRSKLEALERALLDDSDIEVEEEYVISQSMEIDPNIIDWADPDPIQNMLLRDSPKEYSSSDSNISSISREIPKNSRTPKQLLYECATAISEGNEEGASLMINVLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALKCKEPPSLDRLAAMQILFEVCPCFKFGFIAANSAISEAVKDEIKIHIIDFDINQGSQYINLIQTLASRSIKPSHVRLTGIDDPESVQRSLGGLKIIGQRLEQLAETLGLSFEFRAVASRTSIVTSSMLNCRQGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKGLNPKLVTVVEQNVNTNTTPFLQRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMTMAGFISSPMSTNVSDEIRKLVKAYCDRYKIKEEKGALHFGWEDKNLIVASAWK 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03700 526 ProSiteProfiles GRAS family profile. 147 526 IPR005202 -
Trre5g03700 526 Pfam GRAS domain family 157 526 IPR005202 -
Trre5g03700 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 140 521 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03700 Trre-Chr5 36638950 36642144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03700 69 526 GRAS Transcription Factor Family AT1G21450 66.377 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre5g03700 GRAS 4.8e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03700 - - gmx:100788103 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03700 5 36638950 36642144 Trre5g03700 5 36638950 36642144 ECH