Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03660 ATGGAGAGTCCTCCTTCTCCTTCTTGTGTCATTGTTGCTTGTGATTCGACAAGGGACCGCAATGAGCACGATATCAAGCTCGTTATTGATCATGTTCGTGCAAGGGGTATCATTCTCTCTTCTGGCGACAGGTTGCTCGTGCTCTGCATCTTGCATAAGGTGTCTCACCCAATGGGATACCAGACATTAGCATCTCCTGAATATTTTGCCGGCACCAATTTTCGTGCAATGGAGGAAGAAGTCAGAAAAAAAGTGCATGTTTATGGAAATGAGCTTTTATCAAGTCTTGAAGATTTTGAAATCCAAGGGGTTACTGTCGATATTCAAGTCACTGCAGGTTTTCCAATTAGACAGATTATTTTACAAGAGGTTAAAAACTATAATGCATCTTGGATTGTACTTGATAGATACCTTCGGCGCGACATGAGGTACCACCTTAACAAGATACCATGTAAGGTAGCATTGGTTAAAGATGACTTGTCTGTGGATATATGGAGATCTAAAAATGAAAATGACATAAATGTCACAGAAACAAAACCTGTCTTTTCTTTGTCCAAGTTTGTATCATTATCAGATTGCCATAGCATGCAAGACATTGAACATTCAATTATATCTTGCAAGAGTTATCCCCATTCCATAGCTTCTTCTGATAGCTCTGGCACTATTAAGAGCTATTCAATGCATTCATATGCCAACAGTTCATTACATTCTGGATCTTCTTCTAAGCATGAAAGATCAGGTACAATAAGCAGCAAAGGAGAATATAGAAATCTTACTACATCTCAGATTGGTCAAAAGCAAAACCAATGTGTCTTTCTACCAAAATCTTCAGATGCACCAATTCTATGTGCTGGTTGTGGAATAAGGACAGAGTTATCAATCAAGGAGTCAAATAGGTTTACCTATTCTGAAATACAGCTTGCAACAAATGAATTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGTCATGTATTTAAGGGTGTGCTTAAAGATGGACAACAAATTGCAGCAAAAGTAAGGAAACAAGAAAGTGCACAAGGGTTTTCTGAATTTCATTCAGAAGTTTATGTGTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTAGGTTACTGTTGCAAAGAAAATAAAAATATTCTTATATATGAATATATTTGTAATAAGTCTCTTCATTGGCATTTATTTGAAAATAGTGAAACAGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTTGGGACTGCAAAGGGACTGCGTTTCTTACATGAGGAATGTAGAGGTGGTCCTGTTATTCATAGGGACATGCGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGTTGGGTGACTTTGGCCTAGCCAAATGGAATACTGGTGATGATCCTCTTCAAACAAGGATAATGGGCACATTTGGATACCTTGCTCCTGAGTATGCTGAAGATGGCATTGTTTCTGAAGGAACAGATGTGTATTCTTATGGTGTCACTTTGTTACAATTGATATCAGGACGCCAAGTGGCCAATTTCAATAATCCAGATCAGCAACAACAATCTCTTCGACAATGGGCTGAACCAATCATTGAAAAGTTGGCTTTACAAGAACTGATTGATCCTCGTTTGGGGGAATCATATGACACCTATGAGTTATACCTTATGGCTAAAGCAGCTTATTTCTGTATGCAAAGGAAACCTGAGATGCGTCCATCAATGAGAGAGGTTGTGCGTTTTCTTGAGGGAGAAAGTTATCAATTCCAGACCCTGGAACTGGAAGGTCAATTTGTACCAAACCATAACATTTGA 1815 0.3835 MESPPSPSCVIVACDSTRDRNEHDIKLVIDHVRARGIILSSGDRLLVLCILHKVSHPMGYQTLASPEYFAGTNFRAMEEEVRKKVHVYGNELLSSLEDFEIQGVTVDIQVTAGFPIRQIILQEVKNYNASWIVLDRYLRRDMRYHLNKIPCKVALVKDDLSVDIWRSKNENDINVTETKPVFSLSKFVSLSDCHSMQDIEHSIISCKSYPHSIASSDSSGTIKSYSMHSYANSSLHSGSSSKHERSGTISSKGEYRNLTTSQIGQKQNQCVFLPKSSDAPILCAGCGIRTELSIKESNRFTYSEIQLATNEFSKDNLIGEGGYGHVFKGVLKDGQQIAAKVRKQESAQGFSEFHSEVYVLSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENSETVLDWPQRYGIALGTAKGLRFLHEECRGGPVIHRDMRPSNILLTHDFVPMLGDFGLAKWNTGDDPLQTRIMGTFGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRQVANFNNPDQQQQSLRQWAEPIIEKLALQELIDPRLGESYDTYELYLMAKAAYFCMQRKPEMRPSMREVVRFLEGESYQFQTLELEGQFVPNHNI 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03660 604 ProSiteProfiles Protein kinase domain profile. 312 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03660 604 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Trre5g03660 604 MobiDBLite consensus disorder prediction 234 254 - -
Trre5g03660 604 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 284 387 - -
Trre5g03660 604 CDD STKc_IRAK 318 584 - -
Trre5g03660 604 ProSitePatterns Tyrosine protein kinases specific active-site signature. 433 445 IPR008266 GO:0004672|GO:0006468
Trre5g03660 604 SUPERFAMILY Protein kinase-like (PK-like) 296 586 IPR011009 -
Trre5g03660 604 Gene3D Phosphorylase Kinase; domain 1 287 387 - -
Trre5g03660 604 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03660 604 Gene3D Transferase(Phosphotransferase) domain 1 389 595 - -
Trre5g03660 604 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 388 591 - -
Trre5g03660 604 PANTHER OS01G0750732 PROTEIN 201 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03660 Trre-Chr5 35685699 35689366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03660 231 585 Trihelix Transcription Factor Family AT4G32710 41.463 2.62e-78 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre5g03660 Pkinase 1.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03660 - - vun:114163670 960.674