Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03654 ATGGAGTTTGATCCAAATTCCATAGAAATTTCACAACCTCATGCGGGCCCCTCATTATCAATGTCATTAATCGATGCACATGCATCTATGGAAATGATTCCTAAGCTGCTAGATTCTGATAAAAGGCTCGCTCTTGGTGATAAGAATCGGCAAACGAGTGACCAGGAAAAGAATCATGAAATTTTGACTCAAACTGCTAATAAAATCAAAGAAAAATGGACAGCAGATGAGGACAGACTTCTTATCCTACTTGTGGATTGGTTGGGGCCTAAAGATTGGTACTATATTGCTATGTTCATAGAAGACAAGATTGGGAAACAATGCTGGGAGAGATGGCATAACCATCTTAAACCAAATATTAAGAAGGGTCCCTGGAATGAAGAGGAAGACAAAATTCTGATTGAAGCTCATAAAGAAGTTGGGAACAAGTGGACAGAAATTGCAAAGAGATTGCCAGGGCGTCCCGAGAACTCGATCAAGAACCGTTGGAATGCAAATAAGAGGAGTCTGAATCCTAAGAAGATGCACAAAAGGAGAAATGCTGGATTAAAGGGAAAATTACTTCAAAACTATATTAAGGAAGTCATTAGTCAAGAAGGTGAAAGGGAAAATAAGAGCAAGATGTATACTGAAAATGAGGAAGATCGGGCTACTCAAGAGGATGAAGTTGGTGGTGACAATGAAATGACAAGTGGATCTAGCACAATGGATTATGTGGTTGGAATCTAG 729 0.3937 MEFDPNSIEISQPHAGPSLSMSLIDAHASMEMIPKLLDSDKRLALGDKNRQTSDQEKNHEILTQTANKIKEKWTADEDRLLILLVDWLGPKDWYYIAMFIEDKIGKQCWERWHNHLKPNIKKGPWNEEEDKILIEAHKEVGNKWTEIAKRLPGRPENSIKNRWNANKRSLNPKKMHKRRNAGLKGKLLQNYIKEVISQEGERENKSKMYTENEEDRATQEDEVGGDNEMTSGSSTMDYVVGI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03654 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 174 IPR017930 -
Trre5g03654 242 ProSiteProfiles Myb-like domain profile. 117 164 IPR001005 -
Trre5g03654 242 SUPERFAMILY Homeodomain-like 67 163 IPR009057 -
Trre5g03654 242 PANTHER MYB PROTEIN-RELATED 70 204 - -
Trre5g03654 242 SMART sant 121 169 IPR001005 -
Trre5g03654 242 SMART sant 69 118 IPR001005 -
Trre5g03654 242 FunFam Transcriptional activator Myb isoform A 69 121 - -
Trre5g03654 242 MobiDBLite consensus disorder prediction 224 242 - -
Trre5g03654 242 Gene3D - 69 122 - -
Trre5g03654 242 ProSiteProfiles Myb-like domain profile. 65 116 IPR001005 -
Trre5g03654 242 MobiDBLite consensus disorder prediction 199 214 - -
Trre5g03654 242 MobiDBLite consensus disorder prediction 199 242 - -
Trre5g03654 242 CDD SANT 124 167 IPR001005 -
Trre5g03654 242 Gene3D - 124 184 - -
Trre5g03654 242 Pfam Myb-like DNA-binding domain 122 164 IPR001005 -
Trre5g03654 242 Pfam Myb-like DNA-binding domain 70 116 IPR001005 -
Trre5g03654 242 CDD SANT 72 116 IPR001005 -
Trre5g03654 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03654 Trre-Chr5 35375075 35377343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03654 63 195 MYB Transcription Factor Family AT4G18770 57.143 1.89e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g03654 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03654 K09422 - mnt:21403422 183.341