Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03653 ATGGCTAATGAATCTCCTCATATGAAGCCAACCCATTTTTTCAAGATCATATGTGATCAAAATCTTCATGAAGGAAAGCTTATAATGCCAAGAAAGGTATATAATGGTCAAAAGAGGAAGGTTGACTTGACATTTCAATTCCATCAACCATGTGAAATTGGAAGTAGTAGTTGTGTTAAAGTTGAGAAATTGCAAAAGGTAGCAGCTTTGAATCATATTGACAAAAAGTGTAAAGGAGAGCAATTGGTTAATGCTAAGAAAGTTACAGCCCTTGCTAGAGCAATTTCTTTCAAAACTTGTAATCCATCCTTTCATGTAGTTATTCGTCCATCATACATTGAGGGTCCTAGCAATCTGGTCCTGAATATACCAAGTGAGTTTGGCAAAAGACACTTATTAGATTTAGACAATAAGCAGGGAGATATTCATCTTAGGTTATTAAATGGGAAAGTTTGGCAAGCAAAGTACCGAATTAGGATGGGCAAAAGAGGAAGAGAAAGATATGAAATACACTCAAGTGGATGGAAAATATTTGCAAAAGACAACAACTTGAAAGTTGGTGATGCTTGCACCTTTGAGCTCTTACCTACTAGCTCTATAGTTACCTTCATTGTTCACATCTTTAAGGATTAA 633 0.3555 MANESPHMKPTHFFKIICDQNLHEGKLIMPRKVYNGQKRKVDLTFQFHQPCEIGSSSCVKVEKLQKVAALNHIDKKCKGEQLVNAKKVTALARAISFKTCNPSFHVVIRPSYIEGPSNLVLNIPSEFGKRHLLDLDNKQGDIHLRLLNGKVWQAKYRIRMGKRGRERYEIHSSGWKIFAKDNNLKVGDACTFELLPTSSIVTFIVHIFKD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03653 210 ProSiteProfiles B3 DNA-binding domain profile. 121 210 IPR003340 GO:0003677
Trre5g03653 210 Pfam B3 DNA binding domain 121 209 IPR003340 GO:0003677
Trre5g03653 210 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 52 209 IPR044837 -
Trre5g03653 210 CDD B3_DNA 102 209 IPR003340 GO:0003677
Trre5g03653 210 Gene3D - 82 210 IPR015300 -
Trre5g03653 210 SUPERFAMILY DNA-binding pseudobarrel domain 97 209 IPR015300 -
Trre5g03653 210 SMART B3_2 104 207 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03653 Trre-Chr5 35367679 35370104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03653 90 201 REM Transcription Factor Family AT1G49480 35.714 1.25e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g03653 B3 2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03653 - - mtr:11434552 181.03