Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03642 ATGGATGTTGAATTGAAACCTGATGGAAGCTACGTTTGGGAGACAATTGTAAAAGAAACAACTGCAGCAAAATCAAAACCTCAAGTCATGCATTTCCCAAGTATAATTGCTAGCTCGGCTTTGGGAGATAAACAAACAAAAATCTCGGTGGGAACTACAACTGGACAAAGCTTCTCTTGCAACATTATCACCTACCCGAATAGAAGATCTTGTAAATACCTCTCAAAGGAATGGGGTCAATTTGTGAAAAGAAACAATCTTGAAGTTGGGGATAAGCTGATCTTCAATCTTGCAAAACCACCAACAAACCTCATGATTAAGATCATCCATCACAAAGGTCACAACTGA 348 0.3879 MDVELKPDGSYVWETIVKETTAAKSKPQVMHFPSIIASSALGDKQTKISVGTTTGQSFSCNIITYPNRRSCKYLSKEWGQFVKRNNLEVGDKLIFNLAKPPTNLMIKIIHHKGHN 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03642 115 Gene3D - 16 113 IPR015300 -
Trre5g03642 115 Pfam B3 DNA binding domain 21 110 IPR003340 GO:0003677
Trre5g03642 115 ProSiteProfiles B3 DNA-binding domain profile. 15 112 IPR003340 GO:0003677
Trre5g03642 115 CDD B3_DNA 55 109 IPR003340 GO:0003677
Trre5g03642 115 SUPERFAMILY DNA-binding pseudobarrel domain 28 106 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03642 Trre-Chr5 35147611 35148042 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g03642 B3 6.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03642 - K21877 tpra:123904760 78.9517