Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03621 ATGGCTTCGTCTTCCAAAAGATTACCATCCCCTGCAGAATTCAAACACTTTTTTCATACTACCATTGATCCAAAAATGGCAAGAATTGAGATTCCTGATCATTTTTTCAACAAATGGAAAAGCGAATTTGCTAAATACAAATTTGGCTGGATTAGGGGTCCTAAAAGAATCAACTTGATGGTCATGTATACCCAGTCTAACACAGATATCATTCTAACCAATGGAGTGTGTGTTGCAATGGCTTTTGGATTTGTGGAACCAACGAAAGTGGCACTGCACTATGTAATCAAAGACAATACGTTTTGGATGAGAGTGCTAACTGAACCTGAACCTCAACAACCTAAATTTGGACCGGAGATAATCACTATTGATGCAAGTGATGATGAATCCCTTGATGAGAATTGCAAAGAGCCAAATTTGAAAAGGAAGCGAGAAAAGGAGATTACTGTGAAAGAAGAAACCGGTGATTTTTCAATTTTGAGGAGGTCCAAAACAGCTAAACTGAACAACAAACCGGCCCAATTGAAGCCAACTTTGGAAATTGCTGCATCTGGAAAAAAACAAATGAGGAACTCCACCCCCAAGCAATTAAAGAAACAAGGGTTGAAGAAAATTAAAAGGAGAACAATGGATGTTGAATTGAAACCAGATGGAAGCTACGTTTGGGAGAAGATTGTAAAAGAAACAACTGCAGCAAAATCAAACCCTCAAGTCATGCATTTCCCAAGTATAATTGCTAGCTCGGCTTTGGGAGATAAACAAACAAAAATCTCGGTGGGAACTACAACTGGACAAAGCTTCTCTTGCAACATTATTACCTACCCGAATAGAAGATCTTGTAAATACCTCTCAAAAGAATGGGGTCCATTTGTGAAAAGAAACAACCTTGAAGTTGGGGATAAGCTGATCTTCAATCTTGCAAAACCACCAACAAACCTCATGATTAAGATCATCCGTCACAAAGGTCACAACTGA 975 0.3867 MASSSKRLPSPAEFKHFFHTTIDPKMARIEIPDHFFNKWKSEFAKYKFGWIRGPKRINLMVMYTQSNTDIILTNGVCVAMAFGFVEPTKVALHYVIKDNTFWMRVLTEPEPQQPKFGPEIITIDASDDESLDENCKEPNLKRKREKEITVKEETGDFSILRRSKTAKLNNKPAQLKPTLEIAASGKKQMRNSTPKQLKKQGLKKIKRRTMDVELKPDGSYVWEKIVKETTAAKSNPQVMHFPSIIASSALGDKQTKISVGTTTGQSFSCNIITYPNRRSCKYLSKEWGPFVKRNNLEVGDKLIFNLAKPPTNLMIKIIRHKGHN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03621 324 SUPERFAMILY DNA-binding pseudobarrel domain 237 316 IPR015300 -
Trre5g03621 324 Pfam B3 DNA binding domain 234 320 IPR003340 GO:0003677
Trre5g03621 324 Gene3D - 180 322 IPR015300 -
Trre5g03621 324 CDD B3_DNA 272 319 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03621 Trre-Chr5 34961040 34962640 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g03621 B3 7.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03621 - K13103 tpra:123904760 177.563