Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03602 ATGGGAATTGAGGAAGGAGCAAGCAGTCCTGGTAATACTGAATGTGCTGAAGGAGTTCAGTGTTTGAAACGCAAAGCTATTTCTGATGAGATGCTGATTTCAAATGGAAATGGTGTTGTTGAAGAGGCTCGATGCTCGAAAAGTGAAGAGGTGAATGATGGGGCTGTAATTTCCAATGGAAATTGTGTTGTTGAAGAGGTTCGATGCTCGAAAAGTGAAGAGGTGAATGATGGGGCTGTTATTTCCAATGGAAATTGTGTTGCTGAAGAGGTTCGGCACTTGGAAAGTGAAGCCATGAGTGATGAGGTGCCAATTTCAAATGGAAATGGGGTTGTTGAAGCGGCTCAACACTTGGAAAGTGAAGCCATGGGTAGTGATGAGGCTGTAATTTCCAATGGGAATGGTGTTGCTGAAGAGGCTCGGCACTTGAAGAGTGAAGTCGTGAATGACGGGGCAGTGTTAGTGAATGTAAATGGTGCTGCTGAAGTGACTGAGGTTTTGAATAGTGATGGCTTGAATAATGGGGCGAATGTAAATGGTGTTACTGAAGAGGATGGAGGCTTGAAAAGTGAACCCATTAGCAATGGGGCAGCGATTTCAGACGGGTTTGATTCTGTTGATGGGGGATCTTGTGGTGTTACATGTCTTCGCACTTATAAGAGGCGAAAATATGATAAGTCAAGTTCAAAAGGAAAAGCTCAGGAGGATTACAAAAAATGCGTGGAAACTGCAAGTCATATAGCAGACCAGGTTGCAAAAGAACCCTTTGATGCAACTTTAGGCAATACTGCAGATGATTGTGCCCATGGATATTGGGGAAATGTTGTACTGAAGCATTTACATCAGTCACTAGGCATTGCCAATGGTGGCATATGGGAAGCACAAATTGACCGTACATCTCATAAAACACAGGCTGAAGCTAACGGGTATGCACCTGTCATGCAAAATGGATCTTCTAGTGAATCCCAAGATCATGGTGGTACTGAGATGTGTCAGCGTATGCTACACGATATATTAACTTCAGAGGAATTCAATTCATTATGCAAGACTATATTTGAAAATTTTCATGGAATCAAGCCCGAAAGTGTAGTTGATTTTAGTGTCATAATCTCAAGGATGAAGCAGAAATTTTATGAAAGAGCACCTGAACTTTTCTTGTCAGATATTCAACAGGTCTGGAGAAAGCTTCAAAATACTTGCAACAAAATATTTTCATTTTCTAAGAGCCTGTGCGACTTGTCAACTACTTCCTACTCCGAGCTGGTTGAAATTTCAGCGCAGAGCACATTTGAAGATGAAAAGCAAGTGGAATCGGACGGTCACATGAAACCGGAGCAGATGGAAGAATGCGCTATCTATAAAACTTGCCGTTGCAGTTGTTGCAGAGAAAGGGTAGATGGCACAGACTGTTTGGTCTGTGATTCATGCGAGAAGGTGTACCATTTGTCCTGTATTGAGCCTGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTGCTAATTGCACCACAAGTGGCATTGGATCTCCACATGAGAATTGTGTAGTATGTGCGAGGTTGAATGGAAAAAAGACTCCCAAGAAAATAATTGGTGATGAAAGCCTCCCTACAAATGAGGAAACATTTGATGAATTTGAAGAGAATTCAAATAGCAGCTATGCTGGGGTTCAAGTATCTACACGTAAGAGGAAAACATTCAATTGCAAAGTTTGTGAAAATGAAGTCGAAGTCAAAGGTGAAGAAATAAGAGAATGTGGTCACCCTTATTGCCACAGTCAATATTACCATGTAAGGTGTTTGACAAGCAAACAATTAAATATATATAGTTATCAATGGTACTGCCCTTCTTGTATATGCCAAGGTTGCCTCACTAATCATGATGATCAAATTGTCCTCTGTGATGGCTGCGATCATGGATATCACATCTATTGCATGAAACCTCCACTAGTTTCTATTCCACAAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGAATCAAGGCAATATCCCAGGCAAAAAAGGCGTATGAGAGTAACAGGCCAAGAACCGGTGAATATGTTTCGAAGACAAATGGTAATAACAAAAACAATTGCAACAATAAATGTGTAGAAGAATCAGAAAGTGTTGGAGGAATGGACATGCTTTTAACTGCAGCCAATTGTCTTAATTTCGAAGAGAATTTGTCCGAAACCCAGTTTGAGTAG 2205 0.4104 MGIEEGASSPGNTECAEGVQCLKRKAISDEMLISNGNGVVEEARCSKSEEVNDGAVISNGNCVVEEVRCSKSEEVNDGAVISNGNCVAEEVRHLESEAMSDEVPISNGNGVVEAAQHLESEAMGSDEAVISNGNGVAEEARHLKSEVVNDGAVLVNVNGAAEVTEVLNSDGLNNGANVNGVTEEDGGLKSEPISNGAAISDGFDSVDGGSCGVTCLRTYKRRKYDKSSSKGKAQEDYKKCVETASHIADQVAKEPFDATLGNTADDCAHGYWGNVVLKHLHQSLGIANGGIWEAQIDRTSHKTQAEANGYAPVMQNGSSSESQDHGGTEMCQRMLHDILTSEEFNSLCKTIFENFHGIKPESVVDFSVIISRMKQKFYERAPELFLSDIQQVWRKLQNTCNKIFSFSKSLCDLSTTSYSELVEISAQSTFEDEKQVESDGHMKPEQMEECAIYKTCRCSCCRERVDGTDCLVCDSCEKVYHLSCIEPAVKEIPHKSWYCANCTTSGIGSPHENCVVCARLNGKKTPKKIIGDESLPTNEETFDEFEENSNSSYAGVQVSTRKRKTFNCKVCENEVEVKGEEIRECGHPYCHSQYYHVRCLTSKQLNIYSYQWYCPSCICQGCLTNHDDQIVLCDGCDHGYHIYCMKPPLVSIPQGKWFCRKCDAGIKAISQAKKAYESNRPRTGEYVSKTNGNNKNNCNNKCVEESESVGGMDMLLTAANCLNFEENLSETQFE 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03602 734 ProSiteProfiles Zinc finger PHD-type profile. 616 665 IPR019787 -
Trre5g03602 734 SUPERFAMILY FYVE/PHD zinc finger 617 667 IPR011011 -
Trre5g03602 734 Gene3D - 356 505 - -
Trre5g03602 734 SMART PHD_3 457 503 IPR001965 -
Trre5g03602 734 SMART PHD_3 621 663 IPR001965 -
Trre5g03602 734 SMART PHD_3 567 618 IPR001965 -
Trre5g03602 734 Pfam PHD-finger 617 663 IPR019787 -
Trre5g03602 734 Pfam PHD-finger 457 504 IPR019787 -
Trre5g03602 734 FunFam PHD finger protein EHD3 isoform A 349 506 - -
Trre5g03602 734 CDD PHD_RSF1 615 662 - -
Trre5g03602 734 ProSitePatterns Zinc finger PHD-type signature. 614 662 IPR019786 -
Trre5g03602 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 686 IPR013083 -
Trre5g03602 734 SUPERFAMILY FYVE/PHD zinc finger 451 504 IPR011011 -
Trre5g03602 734 PANTHER OS02G0192300 PROTEIN 593 678 - -
Trre5g03602 734 ProSiteProfiles Zinc finger RING-type profile. 568 617 IPR001841 -
Trre5g03602 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 545 617 IPR013083 -
Trre5g03602 734 ProSiteProfiles Zinc finger PHD-type profile. 455 505 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03602 Trre-Chr5 34659453 34667114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03602 618 684 C2H2 Transcription Factor Family AT3G01460 39.706 4.99e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g03602 PHD 5.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03602 - - tpra:123909384 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03602 5 34659453 34667114 Trre5g03602 5 34659453 34667114 ECH