Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03601 ATGGGAATTGAGGAAGGAGCAAGCAGTCCTGGTAATACTGAATGTGCTGAAGGAGTTCAGTGTTTGAAACGCAAAGCTATTTCTGATGAGATGCTGATTTCAAATGGAAATGGTGTTGTTGAAGAGGCTCGATGCTCGAAAAGTGAAGAGGTGAATGATGGGGCTGTAATTTCCAATGGAAATTGTGTTGTTGAAGAGGTTCGATGCTCGAAAAGTGAAGAGGTGAATGATGGGGCTGTTATTTCCAATGGAAATTGTGTTGCTGAAGAGGTTCGGCACTTGGAAAGTGAAGCCATGAGTGATGAGGTGCCAATTTCAAATGGAAATGGGGTTGTTGAAGCGGCTCAACACTTGGAAAGTGAAGCCATGGGTAGTGATGAGGCTGTAATTTCCAATGGGAATGGTGTTGCTGAAGAGGCTCGGCACTTGAAGAGTGAAGTCGTGAATGACGGGGCAGTGTTAGTGAATGTAAATGGTGCTGCTGAAGTGACTGAGGTTTTGAATAGTGATGGCTTGAATAATGGGGCGAATGTAAATGGTGTTACTGAAGAGGATGGAGGCTTGAAAAGTGAACCCATTAGCAATGGGGCAGCGATTTCAGACGGGTTTGATTCTGTTGATGGGGGATCTTGTGGTGTTACATGTCTTCGCACTTATAAGAGGCGAAAATATGATAAGTCAAGTTCAAAAGGAAAAGCTCAGGAGGATTACAAAAAATGCGTGGAAACTGCAAGTCATATAGCAGACCAGGTTGCAAAAGAACCCTTTGATGCAACTTTAGGCAATACTGCAGATGATTGTGCCCATGGATATTGGGGAAATGTTGTACTGAAGCATTTACATCAGTCACTAGGCATTGCCAATGGTGGCATATGGGAAGCACAAATTGACCGTACATCTCATAAAACACAGGCTGAAGCTAACGGGTATGCACCTGTCATGCAAAATGGATCTTCTAGTGAATCCCAAGATCATGGTGGTACTGAGATGTGTCAGCGTATGCTACACGATATATTAACTTCAGAGGAATTCAATTCATTATGCAAGACTATATTTGAAAATTTTCATGGAATCAAGCCCGAAAGTGTAGTTGATTTTAGTGTCATAATCTCAAGGATGAAGCAGAAATTTTATGAAAGAGCACCTGAACTTTTCTTGTCAGATATTCAACAGGTCTGGAGAAAGCTTCAAAATACTTGCAACAAAATATTTTCATTTTCTAAGAGCCTGTGCGACTTGTCAACTACTTCCTACTCCGAGCTGGTTGAAATTTCAGCGCAGAGCACATTTGAAGATGAAAAGCAAGTGTTCTTTTACCAGGAATCGGACGGTCACATGAAACCGGAGCAGATGGAAGAATGCGCTATCTATAAAACTTGCCGTTGCAGTTGTTGCAGAGAAAGGGTAGATGGCACAGACTGTTTGGTCTGTGATTCATGCGAGAAGGTGTACCATTTGTCCTGTATTGAGCCTGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTGCTAATTGCACCACAAGTGGCATTGGATCTCCACATGAGAATTGTGTAGTATGTGCGAGGTTGAATGGAAAAAAGACTCCCAAGAAAATAATTGGTGATGAAAGCCTCCCTACAAATGAGGAAACATTTGATGAATTTGAAGAGAATTCAAATAGCAGCTATGCTGGGGTTCAAGTATCTACACGTAAGAGGAAAACATTCAATTGCAAAGTTTGTGAAAATGAAGTCGAAGTCAAAGGTGAAGAAATAAGAGAATGTGGTCACCCTTATTGCCACAGTCAATATTACCATGTAAGGTGTTTGACAAGCAAACAATTAAATATATATAGTTATCAATGGTACTGCCCTTCTTGTATATGCCAAGGTTGCCTCACTAATCATGATGATCAAATTGTCCTCTGTGATGGCTGCGATCATGGATATCACATCTATTGCATGAAACCTCCACTAGTTTCTATTCCACAAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGAATCAAGGCAATATCCCAGGCAAAAAAGGCGTATGAGAGTAACAGGCCAAGAACCGGTGAATATGTTTCGAAGACAAATGGTAATAACAAAAACAATTGCAACAATAAATGTGTAGAAGAATCAGAAAGTGTTGGAGGAATGGACATGCTTTTAACTGCAGCCAATTGTCTTAATTTCGAAGAGAATTTGTCCGAAACCCAGTTTGAGTAG 2217 0.41 MGIEEGASSPGNTECAEGVQCLKRKAISDEMLISNGNGVVEEARCSKSEEVNDGAVISNGNCVVEEVRCSKSEEVNDGAVISNGNCVAEEVRHLESEAMSDEVPISNGNGVVEAAQHLESEAMGSDEAVISNGNGVAEEARHLKSEVVNDGAVLVNVNGAAEVTEVLNSDGLNNGANVNGVTEEDGGLKSEPISNGAAISDGFDSVDGGSCGVTCLRTYKRRKYDKSSSKGKAQEDYKKCVETASHIADQVAKEPFDATLGNTADDCAHGYWGNVVLKHLHQSLGIANGGIWEAQIDRTSHKTQAEANGYAPVMQNGSSSESQDHGGTEMCQRMLHDILTSEEFNSLCKTIFENFHGIKPESVVDFSVIISRMKQKFYERAPELFLSDIQQVWRKLQNTCNKIFSFSKSLCDLSTTSYSELVEISAQSTFEDEKQVFFYQESDGHMKPEQMEECAIYKTCRCSCCRERVDGTDCLVCDSCEKVYHLSCIEPAVKEIPHKSWYCANCTTSGIGSPHENCVVCARLNGKKTPKKIIGDESLPTNEETFDEFEENSNSSYAGVQVSTRKRKTFNCKVCENEVEVKGEEIRECGHPYCHSQYYHVRCLTSKQLNIYSYQWYCPSCICQGCLTNHDDQIVLCDGCDHGYHIYCMKPPLVSIPQGKWFCRKCDAGIKAISQAKKAYESNRPRTGEYVSKTNGNNKNNCNNKCVEESESVGGMDMLLTAANCLNFEENLSETQFE 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03601 738 ProSiteProfiles Zinc finger PHD-type profile. 459 509 IPR019787 -
Trre5g03601 738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 621 IPR013083 -
Trre5g03601 738 SMART PHD_3 571 622 IPR001965 -
Trre5g03601 738 SMART PHD_3 625 667 IPR001965 -
Trre5g03601 738 SMART PHD_3 461 507 IPR001965 -
Trre5g03601 738 SUPERFAMILY FYVE/PHD zinc finger 621 671 IPR011011 -
Trre5g03601 738 ProSitePatterns Zinc finger PHD-type signature. 618 666 IPR019786 -
Trre5g03601 738 Gene3D - 378 509 - -
Trre5g03601 738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 690 IPR013083 -
Trre5g03601 738 ProSiteProfiles Zinc finger RING-type profile. 572 621 IPR001841 -
Trre5g03601 738 CDD PHD_RSF1 619 666 - -
Trre5g03601 738 Pfam PHD-finger 621 667 IPR019787 -
Trre5g03601 738 Pfam PHD-finger 461 508 IPR019787 -
Trre5g03601 738 SUPERFAMILY FYVE/PHD zinc finger 455 508 IPR011011 -
Trre5g03601 738 ProSiteProfiles Zinc finger PHD-type profile. 620 669 IPR019787 -
Trre5g03601 738 PANTHER OS02G0192300 PROTEIN 597 682 - -
Trre5g03601 738 FunFam PHD finger protein EHD3 isoform A 349 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03601 Trre-Chr5 34659453 34667114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03601 622 688 C2H2 Transcription Factor Family AT3G01460 39.706 4.62e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g03601 PHD 6e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03601 - - tpra:123909384 1200.65