Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03599 ATGCCACGCCATCGTTGCACAGTGTACTCCGAGAGCGATTACGACGACGACGACGATAACGTCACCATGAGGTGTCTTTCTTGCGAGGAAGATTACGATCCCGACGATGCCGGCACCTGCAAAGAATGCTACGACGAAGCTAACGCCTCCGAAGAAGAACTCAAACGTCAGATCCAAGACCTCAAATCTAAAGTCTCCTTCCTCGCTCTTTCTTCTCCACTAGATGCTCCTTCCACCACCGATCTCGTCCTTCTTCCCTCCACCGATGCTTTCTCTCCTTCCATTCCCGCTCACAAGGCCGTTCTCGTTAGCCGCTCTCCAGTTTTCAGAGCCATGCTTGAGAATGACATGGAGGAAAGCCGTAGTGGCACAATCAAGATTGCTGATGTATCATACGATGCCCTTCGTGCCTTTGTTAACTACTTATACACTGCTGAAGCATTCCTTGATAACCAAATGGCCTGCAACCTATTAGTTCTAGCAGAAAAGTATCAAGTGAAGCATCTTAAGGCATACTGTGAGAAGTATTTGATCTCCAAACTGAATTGGGAGAAAGCTATTGTGAACTTTGCTTTTGCACATCAACACAATGCTAACCAATTGCAAGATGCAGCCTTGGCCGTGATCATGGAGAATATGGACAACCTCACTAAAAATGAAGATTATACGGAGTTAGTGGACAGTAATCCTCGTCTTGTCGTGGAAATTTATGAAGCATATCTTTCCAAACAGGTTAATATTGCAGCCACACTCCTATAG 759 0.4585 MPRHRCTVYSESDYDDDDDNVTMRCLSCEEDYDPDDAGTCKECYDEANASEEELKRQIQDLKSKVSFLALSSPLDAPSTTDLVLLPSTDAFSPSIPAHKAVLVSRSPVFRAMLENDMEESRSGTIKIADVSYDALRAFVNYLYTAEAFLDNQMACNLLVLAEKYQVKHLKAYCEKYLISKLNWEKAIVNFAFAHQHNANQLQDAALAVIMENMDNLTKNEDYTELVDSNPRLVVEIYEAYLSKQVNIAATLL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03599 252 Gene3D Potassium Channel Kv1.1; Chain A 48 181 IPR011333 -
Trre5g03599 252 SUPERFAMILY POZ domain 80 179 IPR011333 -
Trre5g03599 252 Coils Coil 44 71 - -
Trre5g03599 252 FunFam BTB/POZ domain-containing protein 183 251 - -
Trre5g03599 252 ProSiteProfiles BTB domain profile. 80 151 IPR000210 GO:0005515
Trre5g03599 252 PANTHER SPECKLE-TYPE POZ PROTEIN 45 244 - -
Trre5g03599 252 Gene3D - 182 250 - -
Trre5g03599 252 SMART BTB_4 80 181 IPR000210 GO:0005515
Trre5g03599 252 Pfam BTB/POZ domain 76 180 IPR000210 GO:0005515
Trre5g03599 252 CDD BTB_POZ_ZBTB_KLHL-like 94 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03599 Trre-Chr5 34551560 34553902 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre5g03599 BTB 5.4e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03599 K10523 - zju:107421125 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03599 5 34551560 34553902 Trre5g03599 5 34551560 34553902 ECH