LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g03595	ATGCAAAAATCTTCTCCCGACGGCGGCTCCGGTTTCCGTACGGTGGTGGTCGGTGTAAAAATGGATTCTCCAAGCAAAGAGCTTCTCACTTGGGCTTTGGTTAAAGTTGCTCAACCTGGTGATCTCGTTGTTGCTCTGCATGTTCTTGGGACAAATGAAATTGTTAATGGAGATGGGAAATCGTCGCTGCTTTCTCTTGTTAAGGCATTTGACTCTGTTCTGAATGTTTATGAAGGATTCTGCAATTTGAAGCAGGTAGATCTTAAGCTAAAAATTTGTCGTGGTTCATCAGTGAAGAAAATTTTGGTACGAGAAGCAAATGCTTATTCTGCAACTCATGTTATTGTTGGAAGTGTTCATAGACTCCATAGAATCCGGTCATCTAGCTCTGTAGCTAAGTACTGTGCTAGAAAGTTATCTAAGGACTGTTGTATTCTTGCTGTTAATAATGGGAAAGTTGTGTTTCAGCGCGACAGCTTGGCAGTATCAACTCCTGTTGCTGATGTACAAGGGTTGGATCGTCATCACGGAAATGGTTTGCTTGGAACAATTCATTCGACACTAAGTAAGGGTACAAAAGTACAAAATGACGATGCTGATGAGGGAACCAGACGAATTTCAGATCACAGTTTAGCTAAGGTTTTACTTGATTCTACCGAAAATGTTAAAAATCACAGTTGCTCAATTTGTGGGGCATTGCAAGACACTTCTTGCCACCAATCTGCAGAAGAGCCTTCAGAAGGATCTGAACGCTCTTCTGTTGATGGTGGCAATGAGAATTCTTTGGCAATAGTTCCTGTACAGACCGTTGATGCCCGACAACCTGAAATGAAACCCGGTTGGCCGCTACTACACCGGAAAATTTTATCAGAAAGGCAATTACTTGATAAACCGTTCATGCGCCACCAGACCTCTGTGGTCCAGTGGGCAATGAAGTTGCCGCGCAGAGATATTTCATATCATGTTGATCATATTCAGGATCAATCTGTGGCTTTAAATAGTGAAAGTGGTGCTCTTATTCCTGTAGACTTGGAGATAGGGAAATCTTATTCGTCGCCTGAATGCAATTTAAAAATTATACCTAAAGAATTGGAGGTACTTCATGAGAAATACTCATCGACATGCAGATTGTTCGAGTACCAAGAACTTGTATCAGCGACATCAAATTTTTTGCCTGAAAACTTGATCGGTAAAGGAGGAAGTAGTATGGTTTATCGAGGCTGCCTCCGTGATGGCAAGGAACTTGCTGTCAAGATCCTAAAGCCTTCTTATGATGTTTTGAAAGAATTTCTTTTGGAAATAGAAATCATAACTACATTGCATCACAAAAACATTATTACACTCCTTGGTTTCTGCTTTGAGAATGGCAATCTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATACACGGGACTAAGAAAAACCCCGGTGAGTTCGGTTGGATGCAGAGATATAAGGTTGCAACAGGTGTTGCTGAGGCTTTGGATTATCTGCATTGTAAAGATGATCAGCCTGTGATCCATCGGGATGTAAAATCATCAAATGTATTACTATCCGAAGATTTTGAACCTCAGCTTTCTGATTTTGGATTGGCTACGTGGGCGTCAACCTCGTCATCGTATATAACATGCACGGATGTTGCCGGAACCTTTGGTTATATGGCTCCTGAATACTTCATGTACGGCAAAGTAAGTGATAAGATCGATGTCTATGCATTTGGTGTCGTGCTGCTTGAGCTTCTTTCAGGTAGAAAGCCCATAAGTGCTGATTTTCCGAAAGGTCAACAGAATCTTGTTATGTGGGCAAGTCCGCTTCTAAATAGCGGAAAGATGTCAGAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAGGATGGTCTTAGCAGCAACACTTTGTATCAAACGTGCTCCAAAAGCTAGACCTCAAATGAGCATTGTATCAAAGCTACTTCAAGGCGATATTGACGCGATCAAGTGGGCAAAGGTGGAAGTCAATACTTTGGAAGCACACGAAATGCTCGATGACGAAGCATGTCCACCAAGTAATCTACAGTCACATCTTAATCTTGCACTGCTTGATGTGGAAGATGACTCACTCTCCATGTATAGTGTTGAGCAAAGTGTGTCACTTGAAGACTACTTGAGAGGCAGGTGGAGCCGATCATCAAGTTTTGACTGA	2211	0.4175	MQKSSPDGGSGFRTVVVGVKMDSPSKELLTWALVKVAQPGDLVVALHVLGTNEIVNGDGKSSLLSLVKAFDSVLNVYEGFCNLKQVDLKLKICRGSSVKKILVREANAYSATHVIVGSVHRLHRIRSSSSVAKYCARKLSKDCCILAVNNGKVVFQRDSLAVSTPVADVQGLDRHHGNGLLGTIHSTLSKGTKVQNDDADEGTRRISDHSLAKVLLDSTENVKNHSCSICGALQDTSCHQSAEEPSEGSERSSVDGGNENSLAIVPVQTVDARQPEMKPGWPLLHRKILSERQLLDKPFMRHQTSVVQWAMKLPRRDISYHVDHIQDQSVALNSESGALIPVDLEIGKSYSSPECNLKIIPKELEVLHEKYSSTCRLFEYQELVSATSNFLPENLIGKGGSSMVYRGCLRDGKELAVKILKPSYDVLKEFLLEIEIITTLHHKNIITLLGFCFENGNLLLVYDFLSRGSLEENIHGTKKNPGEFGWMQRYKVATGVAEALDYLHCKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLATWASTSSSYITCTDVAGTFGYMAPEYFMYGKVSDKIDVYAFGVVLLELLSGRKPISADFPKGQQNLVMWASPLLNSGKMSELLDPSLGDNYDHEEMERMVLAATLCIKRAPKARPQMSIVSKLLQGDIDAIKWAKVEVNTLEAHEMLDDEACPPSNLQSHLNLALLDVEDDSLSMYSVEQSVSLEDYLRGRWSRSSSFD	736

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g03595	736	MobiDBLite	consensus disorder prediction	240	260	-	-
	Trre5g03595	736	ProSiteProfiles	Protein kinase domain profile.	390	684	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g03595	736	FunFam	Putative receptor-like serine/threonine-protein kinase	465	677	-	-
	Trre5g03595	736	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	12	149	-	-
	Trre5g03595	736	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	359	464	-	-
	Trre5g03595	736	Gene3D	Phosphorylase Kinase; domain 1	357	464	-	-
	Trre5g03595	736	PANTHER	OS08G0249100 PROTEIN	75	672	IPR046958	-
	Trre5g03595	736	Pfam	Universal stress protein family	12	144	IPR006016	-
	Trre5g03595	736	Gene3D	HUPs	11	150	IPR014729	-
	Trre5g03595	736	SUPERFAMILY	Protein kinase-like (PK-like)	371	660	IPR011009	-
	Trre5g03595	736	Gene3D	Transferase(Phosphotransferase) domain 1	465	678	-	-
	Trre5g03595	736	Pfam	Protein kinase domain	394	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g03595	736	CDD	USP_Like	14	148	-	-
	Trre5g03595	736	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	511	523	IPR008271	GO:0004672\|GO:0006468
	Trre5g03595	736	CDD	STKc_IRAK	396	663	-	-
	Trre5g03595	736	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	12	147	-	-
	Trre5g03595	736	SMART	serkin_6	390	671	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g03595	736	ProSitePatterns	Protein kinases ATP-binding region signature.	396	418	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g03595	Trre-Chr5	34470050	34473394	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g03595	377	657	Trihelix Transcription Factor Family	AT1G68690	45.645	1.54e-72	247

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Trre5g03595		Pkinase	3.8e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g03595	-		-	pcin:129303222	1012.68