Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03592 ATGGGGTCGTGTGGTGAGCCTGCAATTGTTGGTGATCCATCTGGTTTGTCTGTAATGGAGCAGCCTTTCAGCTCGGAGTTAGATTCTGTGCAGGAGTTGTGCTCGGAGGAAGCTTGCAATGGTGTGGTTGATGGTTCTGTGGGAGAGGGTCATGTGAGTTGTTCTGTAAGCTTTGTTGATGTTGCCGAGGGGTCCCGAGATGCTTTGAAAAATGAGTGTGAAAATGGTGATATGTTAAAATTGGAGAAAGCTGTTGAAGATGATTGTGGGAATAGTTTGGGGATTTGTTCGGAAGACGTTCAAGTCTCTGATCTTAAAAGTGGTGGATTGTGCTCAGAAGGAAGTTTTCAAGATGAAGGCTACGTTGACTTTCCGTTGGAGTCAATAACCTCAAATAGTTTGCAGAAGCATTGTGCTGAACAGGGTGAGCAGAAGGATGTCATTGAAGTTTCTGAACTTAAAAGTGGTGGATTGTGCTCGGAAGGAAATTTTCAAGATGAAGGCTACGTTGACATTCCGTTGGAGTCAATAACCTCGGATAATTTGCAGAAGCATTGTGTTGAACAGGGTGAGCAGAAGGATGTCATTGAAGTATCCGATCTTAAAAGTAGTGGATTGTGCTCAGAAGGAAATTTTCAAGATGGACACTACGTTGACCTTCCGTTGGAGTCAATAACCTCAAATAATTTGCAGAAGCATTGTGCTGAACAGGGTGAGCAGAAGGATGTCAAGAGCATAATTTTTCCCTCGGCAGGAGATGATTCGGAAGTTATGGAAGGAAAAACCGATGGTGCTGATTTGCTAGCAGGTGCTGTCAACTGTGTGTTTGATGCCAGACATTCTGAAGTGTGTTTGGAATCTGATTTCGTGACAGATTTGCTAGTTGATTACAACCAGGAAAATGAGCCAGAGGAGATCATGAGAAATGCAGATAGCTTGCCAAGGGTTGTAGAAAATTGTGATGCTTTAGGTGGGATGGACACCAATTCTTGCAGGCAGATATCTCCTTCACTGGATGTGGAAGTGCCGTCAGGTGTCTTATATATAGATAGAAAAGTAGAGAGCACAAGTGATATTCTACATGATCAGAAAAATGGCGAGGATTGTGACAGTACTCGTGAAGAAAAGATAAGAACCGATGTTGATGAAGAAATCACTATTAATTCATATGTACAAGCAAATTCCTCACCAAATTTCCAAAGGATCTTGAAGACTTCACCTGTAGTTGATTCACTATGTCAGCCTACCTTGCTGGATCGAGGGAGCAAATTGAAAAATGGCATATTGAAAACCGAAGATAATTTTTGTATGTCGAAGGATTGTTCTGCAGATGTACTTGCCAACTCTACCATTAGAAAGCCATTTTATCCAGAATCAGGTCAGTCCTCTTTTGTATTAATCACCAACAGCTCCCCAAAGGATGTTCCGGATCTCCTTTGCAAGGGCGATGGTGTTTCCATCAACAATAATTGTGCTGTAGACAATCCTGGACAGACAAAAAATGATGGAAAAGAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACTGTTACCTTCTCAGAGGAGCAGCCAGAGAACCAAATTTGGTCGCAAGACACAAACCAGAAAGTCTTCTAGAAAATCCAAGAACAAAGCCAGTGTGACACATCCAGGTGGGGGTATGAAGATTAACTTAGAGGCTGCTAGAAAAAGAAGAAGCTGTTTATCCAAACCAGCTCGTTCTTCTGTCTGGGGATTGCTTGGCAATATTGAACAGTTTATTCAGCATGAAAATGAGCTTGAAGTTAGTGAAGCCATGGACCAGAGTGAGGGTAAGGCTAGAAACGGGCATCAAGGTACGAAAATGATTAAGAATGGTGCAAGTTCTAGCTCATTAAGTTCAGTTCAAAAGCATAATGTTTCAACTTCAACTACTCGTTTTCGTCTGAAGATCAAGTTTGGAAAAGAAAATGATTTACATTGCTCAAATGTTCTGGAGTCTGTTGGTGGCTTGGCTTCTGCTTCCTATTTGGGGTCTGATTCAGGTTCTCAGAAAGTAACCAACAATTCTGCAGATAAATTTTCCGAAGTGCCGGCTTTAAACAATTTAGAATCATTCAGAAAGGACCTGGACAAGGACTGTGTTGTTGTAAATGAACAAATTGTAAATAGTCAGTTAGAAAATTCTAAAATAACGGAGAAGTCAGATGGGGATGCAGAGGAACCATGTCACACAGTTCCTCCAGAGAGAGTGGTTGAAGAATTAGTTAAGCCAATTAATAATTCTGTTATTGAACCAGGAACATCACCTGATTCAGAAGTCATTGATTCAATTCCTGAAGTCCAGGTTGGAGAGAGACATGAAGATGTACATCTTGCTGTGTTAGGTTCTTCTAATGAGTTAAATTCTAATATGGATGTTACCTTTGGGAAGAGAGAGAAGAAGAAAGACAATCTTATTTGTTCAGGCAATTGTATCACTGAAGATGGATCACAAGGTCTACTAGGGAATAATATAGTTAAGCATTCAAAGAATCACAGACGTAAGAAGAACTTCAAGGATGTGGTTAGCTCTTTAGAATTACCTACTTCCACTGAGCTAAGCAAATCTGTAAAGAGTAAAGAATTGGCTGCAGAATCATTGCTCCGTTCTGGAGAGGTTGTACTTGGAGTCTCTACCAAGGCTTTGAAAGTTAAAAGTGATGTGAAAGTCAAGCCAGCTGGCAAAACATATGGTAGCCATGGATTTTCTGAATTCCAGGCATCCCAGGATTTGCCGTCTTCTACTAGACCTTTGGGTCGTAAATTACCTAAAAGTTTTGAACCTATTGATGTTAGCACGGCCAAATCAAAAGCTTCTGATTCAACAAGCAGGAAAAAGACTACTGGACGCAAAGAGAAGCAGAAAGAGCCAATTAACAAAAGTGAAGTCAAGGGAAAATGTGTCTCTGTCAAAGTTACATCTGAAGTAGAAGATCACCTGCGTCCAGATGTAGTTGGAAATCATAAGTTGGATGCTGTTGGAAAAATTGATCCCAGTGACAACAGTGTATCTGTCAATGTATCTAATTTGGACATGCAGCCTGGTTTTGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGTCACAAGTGGCGGCGTATTCCAGCTTTGCTTGCTGACCGGATTGATGAAACTAACTGCACCTGGACTTGCAAGGACAGCAGTGATAAAGCCTTTGCTGATTGTGATATCCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAGTTAGGACTATCATATGCCTCTGGTGAAGAAGATGTATGCGAAGACTCCAAAAACTATAAGGAATTAGAATATCGACTACCATCGGTTTCCCAAGAGTCAACTTTTACCCGCATCTTCACCAATGAGTTTCTGCACCGCAACCCGAAAACTCAGACTATTGACGAGGTAATGGTTTGCCATTGCAAGCCACCTCCAGAAGGCAAGTTGGGATGTGGGGATGAATGTCTAAATCGGATGCTTAACATTGAATGTGTGCAAGGAACTTGCCCGTGTGGGGATCGTTGCTCCAATCAGCAGTTCCAAAAACGCAGCTATTCCAGATTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGGCTGAAGGCACTTGAGCGTGTAGCCAAAGGCCATTTCATTATTGAATATGTTGGAGAGGTCCTTGATATGCCTGCATATGAGGCACGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAACGGCAGTGAGGTGATTGATGCAAGCGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCCAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAGATCTGTATTGGACTGTTTGCATTGCGGAATATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTTTGGAGCTGCTGCCAAAAAATGCTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAGCTTATAGTTCATGGTGATTCTGATGATGAATATCCAGAACCCATGATGCTTACCGAAGATGGTGAAATTGAGGACAGCACACCTATGCCCTTTGATAATGTTGATACGGAGTCTTCTAGGCATGTATTAACGGACAGGGATGTATTGGACAAGTCTACAACTGCTATAGATGAAGATGGGTCTCCAGGGAAAGATAGTTCTGTGAACCCTGCCTCTGCTGTTTCCCTGTTGCACAGTTCAGTTGAAGTGGAAGACTCAAAAGGCAATTTACCATCTAATCAATTAGAAGAAATTTCTCAGCAAATGGAGGATACAACAAGCAAACCCATGCCTGCTGTCAGCAAAGTGTTGTCGAATTCTACTGATAGTAGAGAATCCAAGTCTGAAATGGTTGAAGGCGGGAATGGTGTTTCCCAATCACATCTGCATGTGAAGAAGACTTCTAAACTAAATGCTTCTGTTAAAAAGGCTAAAGTCAGTGCTAATGCTGCAAATGGTCCTACAGCTGAGGTCGCAGCCAATCGATTGCCAGTGTCATCTATCAAACACAAAAAAGTAATTGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGACGCCACTAAAGGCTACTTGAAACTTTTGCTTCTCACCGTGGCTTCAGGTGATAGATACACTGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATATAATTAGCAAAAATGGTTTACAGATGTTGCATAAGATCATGAAGCAGTACAGGCAAGACTTCAAAAAAATTCCAATACTGCGAAAGCTTCTTAAGGTCTTGGAGTACCTGGCAGAAGGCAAGGTTTTGACACCCGAACATATCAACAGTGGTCCTCCCTGTCGAGGAATGGAGAGTTTTAGGCGTTCAATGTTGTCTTTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCGCAGAAATGGCAGAAAACGTGGCCATATGGACAGGGATGATAATAGGGTGGAATCTCACAGAAATTTCAACAGATTTTCAGTATCACACAATCATAGGCACGAGCAGGGATTACGACCTAAGGAAGAAATTGATTGCGGTCAGCAGTCTATGCTCGTGACAACTTCAGTAGATGGTGGCTCCCAGGATGGCTGCTCTACACCGTCTTTGGATGGAGTTGAGATCAATGGGGTAAAAAAGCGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAAACAAATTCATATTATGGTGCTGCTGTTATTGGCTCTACCAATGAAAGCCAGATCATGAATGAAGAACTTCCACCAGGGTTTTCATGTCCAGTACGTTCTTCAAATAGTGCACTAAACTCGGGCAGTCCTGCTTTGCAAAATGCAAGCCATTTCGGATGGCCCTCTAGTTTAGTTACTGGTCAGCCAAAAGAGAAATTCAATTCTCGTTTGCCTGTCTCATATGGAATGCCATGGTCTGTTGCTCAGCAATACGGAACTCTTCATGCTGAAATCACAGGGTGTTGGGTCACTGCTCCTGGCATGCCTTTCAACCCATTTCCTCCATTACCCCCATATCCACGGGATATCCAAGACTGTCAACCTTCTAATACTAATGGTATGGAAATTGATCAACCTGCTGAAGTTATGCAACAGGATGCCAATGGTGTGATTAATTGTTGCTCAGAATCAGATAATACTACCAGCACAGCTGGTGCTAAGCCTGAAGACACGAACCTTGAATGCGAGGAATATAAACACGACACTAAGAGGTTGAAGGGTAACTCCAATGATTTGGGGAAGAATTACTTTAGACAGCAGAAATGGAACAATTCAAAAATACATCGAACGTGGTTTAAGAGGAATGCATGGAAATGTAACGACAACAACTCTAGTGGTGATATGTGCAGTGTAGATGTAGGAGATGTATCAAAAGAATCCAAAGTTACTAGTTATTCGGAGGATGCAATCTGTAGAGATGAGAAAGGTGGAAAATAA 6126 0.4192 MGSCGEPAIVGDPSGLSVMEQPFSSELDSVQELCSEEACNGVVDGSVGEGHVSCSVSFVDVAEGSRDALKNECENGDMLKLEKAVEDDCGNSLGICSEDVQVSDLKSGGLCSEGSFQDEGYVDFPLESITSNSLQKHCAEQGEQKDVIEVSELKSGGLCSEGNFQDEGYVDIPLESITSDNLQKHCVEQGEQKDVIEVSDLKSSGLCSEGNFQDGHYVDLPLESITSNNLQKHCAEQGEQKDVKSIIFPSAGDDSEVMEGKTDGADLLAGAVNCVFDARHSEVCLESDFVTDLLVDYNQENEPEEIMRNADSLPRVVENCDALGGMDTNSCRQISPSLDVEVPSGVLYIDRKVESTSDILHDQKNGEDCDSTREEKIRTDVDEEITINSYVQANSSPNFQRILKTSPVVDSLCQPTLLDRGSKLKNGILKTEDNFCMSKDCSADVLANSTIRKPFYPESGQSSFVLITNSSPKDVPDLLCKGDGVSINNNCAVDNPGQTKNDGKEAVEVDCITESILLPSQRSSQRTKFGRKTQTRKSSRKSKNKASVTHPGGGMKINLEAARKRRSCLSKPARSSVWGLLGNIEQFIQHENELEVSEAMDQSEGKARNGHQGTKMIKNGASSSSLSSVQKHNVSTSTTRFRLKIKFGKENDLHCSNVLESVGGLASASYLGSDSGSQKVTNNSADKFSEVPALNNLESFRKDLDKDCVVVNEQIVNSQLENSKITEKSDGDAEEPCHTVPPERVVEELVKPINNSVIEPGTSPDSEVIDSIPEVQVGERHEDVHLAVLGSSNELNSNMDVTFGKREKKKDNLICSGNCITEDGSQGLLGNNIVKHSKNHRRKKNFKDVVSSLELPTSTELSKSVKSKELAAESLLRSGEVVLGVSTKALKVKSDVKVKPAGKTYGSHGFSEFQASQDLPSSTRPLGRKLPKSFEPIDVSTAKSKASDSTSRKKTTGRKEKQKEPINKSEVKGKCVSVKVTSEVEDHLRPDVVGNHKLDAVGKIDPSDNSVSVNVSNLDMQPGFGLGEQPQSPRNAWVSCDDCHKWRRIPALLADRIDETNCTWTCKDSSDKAFADCDIPQEKSNAEINAELGLSYASGEEDVCEDSKNYKELEYRLPSVSQESTFTRIFTNEFLHRNPKTQTIDEVMVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDRCSNQQFQKRSYSRLKWFKCGKKGYGLKALERVAKGHFIIEYVGEVLDMPAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRNIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVHGDSDDEYPEPMMLTEDGEIEDSTPMPFDNVDTESSRHVLTDRDVLDKSTTAIDEDGSPGKDSSVNPASAVSLLHSSVEVEDSKGNLPSNQLEEISQQMEDTTSKPMPAVSKVLSNSTDSRESKSEMVEGGNGVSQSHLHVKKTSKLNASVKKAKVSANAANGPTAEVAANRLPVSSIKHKKVIEGSSNGRFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRYTGEAIQSNRDLSMILDALLKTKSRAVLNDIISKNGLQMLHKIMKQYRQDFKKIPILRKLLKVLEYLAEGKVLTPEHINSGPPCRGMESFRRSMLSLTEHDDKQVHQIARSFRDRWIRRNGRKRGHMDRDDNRVESHRNFNRFSVSHNHRHEQGLRPKEEIDCGQQSMLVTTSVDGGSQDGCSTPSLDGVEINGVKKRKRKSRWDQPAETNSYYGAAVIGSTNESQIMNEELPPGFSCPVRSSNSALNSGSPALQNASHFGWPSSLVTGQPKEKFNSRLPVSYGMPWSVAQQYGTLHAEITGCWVTAPGMPFNPFPPLPPYPRDIQDCQPSNTNGMEIDQPAEVMQQDANGVINCCSESDNTTSTAGAKPEDTNLECEEYKHDTKRLKGNSNDLGKNYFRQQKWNNSKIHRTWFKRNAWKCNDNNSSGDMCSVDVGDVSKESKVTSYSEDAICRDEKGGK 2041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03592 2041 ProSiteProfiles Zinc finger CW-type profile. 1031 1085 IPR011124 GO:0008270
Trre5g03592 2041 Pfam SET domain 1208 1314 IPR001214 GO:0005515
Trre5g03592 2041 MobiDBLite consensus disorder prediction 1366 1416 - -
Trre5g03592 2041 MobiDBLite consensus disorder prediction 909 923 - -
Trre5g03592 2041 SMART shorttest3 1145 1196 IPR006560 GO:0005634|GO:0042054
Trre5g03592 2041 SUPERFAMILY SET domain 1126 1335 IPR046341 -
Trre5g03592 2041 MobiDBLite consensus disorder prediction 907 972 - -
Trre5g03592 2041 MobiDBLite consensus disorder prediction 1445 1470 - -
Trre5g03592 2041 ProSiteProfiles AWS domain profile. 1145 1195 IPR006560 GO:0005634|GO:0042054
Trre5g03592 2041 Gene3D SET domain 1093 1346 IPR046341 -
Trre5g03592 2041 MobiDBLite consensus disorder prediction 1445 1489 - -
Trre5g03592 2041 SMART set_7 1197 1320 IPR001214 GO:0005515
Trre5g03592 2041 MobiDBLite consensus disorder prediction 615 633 - -
Trre5g03592 2041 FunFam Histone-lysine N-methyltransferase 1029 1090 - -
Trre5g03592 2041 CDD SET_SETD2 1196 1338 IPR044437 GO:0010452|GO:0046975
Trre5g03592 2041 PANTHER SET DOMAIN PROTEINS 539 1791 - -
Trre5g03592 2041 SMART PostSET_3 1322 1338 IPR003616 -
Trre5g03592 2041 MobiDBLite consensus disorder prediction 598 633 - -
Trre5g03592 2041 MobiDBLite consensus disorder prediction 522 559 - -
Trre5g03592 2041 FunFam Histone-lysine N-methyltransferase 1096 1353 - -
Trre5g03592 2041 ProSiteProfiles Post-SET domain profile. 1322 1338 IPR003616 -
Trre5g03592 2041 ProSiteProfiles SET domain profile. 1197 1314 IPR001214 GO:0005515
Trre5g03592 2041 Gene3D - 1027 1090 - -
Trre5g03592 2041 MobiDBLite consensus disorder prediction 529 544 - -
Trre5g03592 2041 MobiDBLite consensus disorder prediction 947 970 - -
Trre5g03592 2041 Pfam AWS domain 1160 1194 IPR006560 GO:0005634|GO:0042054
Trre5g03592 2041 MobiDBLite consensus disorder prediction 1384 1404 - -
Trre5g03592 2041 Pfam CW-type Zinc Finger 1037 1083 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03592 Trre-Chr5 34323390 34335551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03592 1179 1338 Su(var)3-9 homologs AT1G73100 34.536 1.71e-19 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre5g03592 SET 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03592 - - mtr:25489708 2939.83