Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03591 ATGGGGTCGTGTGGTGAGCCTGCAATTGTTGGTGATCCATCTGGTTTGTCTGTAATGGAGCAGCCTTTCAGCTCGGAGTTAGATTCTGTGCAGGAGTTGTGCTCGGAGGAAGCTTGCAATGGTGTGGTTGATGGTTCTGTGGGAGAGGGTCATGTGAGTTGTTCTGTAAGCTTTGTTGATGTTGCCGAGGGGTCCCGAGATGCTTTGAAAAATGAGTGTGAAAATGGTGATATGTTAAAATTGGAGAAAGCTGTTGAAGATGATTGTGGGAATAGTTTGGGGATTTGTTCGGAAGACGTTCAAGTCTCTGATCTTAAAAGTGGTGGATTGTGCTCAGAAGGAAGTTTTCAAGATGAAGGCTACGTTGACTTTCCGTTGGAGTCAATAACCTCAAATAGTTTGCAGAAGCATTGTGCTGAACAGGGTGAGCAGAAGGATGTCATTGAAGTTTCTGAACTTAAAAGTGGTGGATTGTGCTCGGAAGGAAATTTTCAAGATGAAGGCTACGTTGACATTCCGTTGGAGTCAATAACCTCGGATAATTTGCAGAAGCATTGTGTTGAACAGGGTGAGCAGAAGGATGTCATTGAAGTATCCGATCTTAAAAGTAGTGGATTGTGCTCAGAAGGAAATTTTCAAGATGGACACTACGTTGACCTTCCGTTGGAGTCAATAACCTCAAATAATTTGCAGAAGCATTGTGCTGAACAGGGTGAGCAGAAGGATGTCAAGAGCATAATTTTTCCCTCGGCAGGAGATGATTCGGAAGTTATGGAAGGAAAAACCGATGGTGCTGATTTGCTAGCAGGTGCTGTCAACTGTGTGTTTGATGCCAGACATTCTGAAGTGTGTTTGGAATCTGATTTCGTGACAGATTTGCTAGTTGATTACAACCAGGAAAATGAGCCAGAGGAGATCATGAGAAATGCAGATAGCTTGCCAAGGGTTGTAGAAAATTGTGATGCTTTAGGTGGGATGGACACCAATTCTTGCAGGCAGATATCTCCTTCACTGGATGTGGAAGTGCCGTCAGGTGTCTTATATATAGATAGAAAAGTAGAGAGCACAAGTGATATTCTACATGATCAGAAAAATGGCGAGGATTGTGACAGTACTCGTGAAGAAAAGATAAGAACCGATGTTGATGAAGAAATCACTATTAATTCATATGTACAAGCAAATTCCTCACCAAATTTCCAAAGGATCTTGAAGACTTCACCTGTAGTTGATTCACTATGTCAGCCTACCTTGCTGGATCGAGGGAGCAAATTGAAAAATGGCATATTGAAAACCGAAGATAATTTTTGTATGTCGAAGGATTGTTCTGCAGATGTACTTGCCAACTCTACCATTAGAAAGCCATTTTATCCAGAATCAGGTCAGTCCTCTTTTGTATTAATCACCAACAGCTCCCCAAAGGATGTTCCGGATCTCCTTTGCAAGGGCGATGGTGTTTCCATCAACAATAATTGTGCTGTAGACAATCCTGGACAGACAAAAAATGATGGAAAAGAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACTGTTACCTTCTCAGAGGAGCAGCCAGAGAACCAAATTTGGTCGCAAGACACAAACCAGAAAGTCTTCTAGAAAATCCAAGAACAAAGCCAGTGTGACACATCCAGGTGGGGGTATGAAGATTAACTTAGAGGCTGCTAGAAAAAGAAGAAGCTGTTTATCCAAACCAGCTCGTTCTTCTGTCTGGGGATTGCTTGGCAATATTGAACAGTTTATTCAGCATGAAAATGAGCTTGAAGTTAGTGAAGCCATGGACCAGAGTGAGGGTAAGGCTAGAAACGGGCATCAAGGTACGAAAATGATTAAGAATGGTGCAAGTTCTAGCTCATTAAGTTCAGTTCAAAAGCATAATGTTTCAACTTCAACTACTCGTTTTCGTCTGAAGATCAAGTTTGGAAAAGAAAATGATTTACATTGCTCAAATGTTCTGGAGTCTGTTGGTGGCTTGGCTTCTGCTTCCTATTTGGGGTCTGATTCAGGTTCTCAGAAAGTAACCAACAATTCTGCAGATAAATTTTCCGAAGTGCCGGCTTTAAACAATTTAGAATCATTCAGAAAGGACCTGGACAAGGACTGTGTTGTTGTAAATGAACAAATTGTAAATAGTCAGTTAGAAAATTCTAAAATAACGGAGAAGTCAGATGGGGATGCAGAGGAACCATGTCACACAGTTCCTCCAGAGAGAGTGGTTGAAGAATTAGTTAAGCCAATTAATAATTCTGTTATTGAACCAGGAACATCACCTGATTCAGAAGTCATTGATTCAATTCCTGAAGTCCAGGTTGGAGAGAGACATGAAGATGTACATCTTGCTGTGTTAGGTTCTTCTAATGAGTTAAATTCTAATATGGATGTTACCTTTGGGAAGAGAGAGAAGAAGAAAGACAATCTTATTTGTTCAGGCAATTGTATCACTGAAGATGGATCACAAGGTCTACTAGGGAATAATATAGTTAAGCATTCAAAGAATCACAGACGTAAGAAGAACTTCAAGGATGTGGTTAGCTCTTTAGAATTACCTACTTCCACTGAGCTAAGCAAATCTGTAAAGAGTAAAGAATTGGCTGCAGAATCATTGCTCCGTTCTGGAGAGGTTGTACTTGGAGTCTCTACCAAGGCTTTGAAAGTTAAAAGTGATGTGAAAGTCAAGCCAGCTGGCAAAACATATGGTAGCCATGGATTTTCTGAATTCCAGGCATCCCAGGATTTGCCGTCTTCTACTAGACCTTTGGGTCGTAAATTACCTAAAAGTTTTGAACCTATTGATGTTAGCACGGCCAAATCAAAAGCTTCTGATTCAACAAGCAGGAAAAAGACTACTGGACGCAAAGAGAAGCAGAAAGAGCCAATTAACAAAAGTGAAGTCAAGGGAAAATGTGTCTCTGTCAAAGTTACATCTGAAGTAGAAGATCACCTGCGTCCAGCAGATGTAGTTGGAAATCATAAGTTGGATGCTGTTGGAAAAATTGATCCCAGTGACAACAGTGTATCTGTCAATGTATCTAATTTGGACATGCAGCCTGGTTTTGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGTCACAAGTGGCGGCGTATTCCAGCTTTGCTTGCTGACCGGATTGATGAAACTAACTGCACCTGGACTTGCAAGGACAGCAGTGATAAAGCCTTTGCTGATTGTGATATCCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAGTTAGGACTATCATATGCCTCTGGTGAAGAAGATGTATGCGAAGACTCCAAAAACTATAAGGAATTAGAATATCGACTACCATCGGTTTCCCAAGAGTCAACTTTTACCCGCATCTTCACCAATGAGTTTCTGCACCGCAACCCGAAAACTCAGACTATTGACGAGGTAATGGTTTGCCATTGCAAGCCACCTCCAGAAGGCAAGTTGGGATGTGGGGATGAATGTCTAAATCGGATGCTTAACATTGAATGTGTGCAAGGAACTTGCCCGTGTGGGGATCGTTGCTCCAATCAGCAGTTCCAAAAACGCAGCTATTCCAGATTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGGCTGAAGGCACTTGAGCGTGTAGCCAAAGGCCATTTCATTATTGAATATGTTGGAGAGGTCCTTGATATGCCTGCATATGAGGCACGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAACGGCAGTGAGGTGATTGATGCAAGCGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCCAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAGATCTGTATTGGACTGTTTGCATTGCGGAATATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTTTGGAGCTGCTGCCAAAAAATGCTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAGCTTATAGTTCATGGTGATTCTGATGATGAATATCCAGAACCCATGATGCTTACCGAAGATGGTGAAATTGAGGACAGCACACCTATGCCCTTTGATAATGTTGATACGGAGTCTTCTAGGCATGTATTAACGGACAGGGATGTATTGGACAAGTCTACAACTGCTATAGATGAAGATGGGTCTCCAGGGAAAGATAGTTCTGTGAACCCTGCCTCTGCTGTTTCCCTGTTGCACAGTTCAGTTGAAGTGGAAGACTCAAAAGGCAATTTACCATCTAATCAATTAGAAGAAATTTCTCAGCAAATGGAGGATACAACAAGCAAACCCATGCCTGCTGTCAGCAAAGTGTTGTCGAATTCTACTGATAGTAGAGAATCCAAGTCTGAAATGGTTGAAGGCGGGAATGGTGTTTCCCAATCACATCTGCATGTGAAGAAGACTTCTAAACTAAATGCTTCTGTTAAAAAGGCTAAAGTCAGTGCTAATGCTGCAAATGGTCCTACAGCTGAGGTCGCAGCCAATCGATTGCCAGTGTCATCTATCAAACACAAAAAAGTAATTGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGACGCCACTAAAGGCTACTTGAAACTTTTGCTTCTCACCGTGGCTTCAGGTGATAGATACACTGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATATAATTAGCAAAAATGGTTTACAGATGTTGCATAAGATCATGAAGCAGTACAGGCAAGACTTCAAAAAAATTCCAATACTGCGAAAGCTTCTTAAGGTCTTGGAGTACCTGGCAGAAGGCAAGGTTTTGACACCCGAACATATCAACAGTGGTCCTCCCTGTCGAGGAATGGAGAGTTTTAGGCGTTCAATGTTGTCTTTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCGCAGAAATGGCAGAAAACGTGGCCATATGGACAGGGATGATAATAGGGTGGAATCTCACAGAAATTTCAACAGATTTTCAGTATCACACAATCATAGGCACGAGCAGGGATTACGACCTAAGGAAGAAATTGATTGCGGTCAGCAGTCTATGCTCGTGACAACTTCAGTAGATGGTGGCTCCCAGGATGGCTGCTCTACACCGTCTTTGGATGGAGTTGAGATCAATGGGGTAAAAAAGCGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAAACAAATTCATATTATGGTGCTGCTGTTATTGGCTCTACCAATGAAAGCCAGATCATGAATGAAGAACTTCCACCAGGGTTTTCATGTCCAGTACGTTCTTCAAATAGTGCACTAAACTCGGGCAGTCCTGCTTTGCAAAATGCAAGCCATTTCGGATGGCCCTCTAGTTTAGTTACTGGTCAGCCAAAAGAGAAATTCAATTCTCGTTTGCCTGTCTCATATGGAATGCCATGGTCTGTTGCTCAGCAATACGGAACTCTTCATGCTGAAATCACAGGGTGTTGGGTCACTGCTCCTGGCATGCCTTTCAACCCATTTCCTCCATTACCCCCATATCCACGGGATATCCAAGACTGTCAACCTTCTAATACTAATGGTATGGAAATTGATCAACCTGCTGAAGTTATGCAACAGGATGCCAATGGTGTGATTAATTGTTGCTCAGAATCAGATAATACTACCAGCACAGCTGGTGCTAAGCCTGAAGACACGAACCTTGAATGCGAGGAATATAAACACGACACTAAGAGGTTGAAGGGTAACTCCAATGATTTGGGGAAGAATTACTTTAGACAGCAGAAATGGAACAATTCAAAAATACATCGAACGTGGTTTAAGAGGAATGCATGGAAATGTAACGACAACAACTCTAGTGGTGATATGTGCAGTGTAGATGTAGGAGATGTATCAAAAGAATCCAAAGTTACTAGTTATTCGGAGGATGCAATCTGTAGAGATGAGAAAGGTGGAAAATAA 6129 0.4193 MGSCGEPAIVGDPSGLSVMEQPFSSELDSVQELCSEEACNGVVDGSVGEGHVSCSVSFVDVAEGSRDALKNECENGDMLKLEKAVEDDCGNSLGICSEDVQVSDLKSGGLCSEGSFQDEGYVDFPLESITSNSLQKHCAEQGEQKDVIEVSELKSGGLCSEGNFQDEGYVDIPLESITSDNLQKHCVEQGEQKDVIEVSDLKSSGLCSEGNFQDGHYVDLPLESITSNNLQKHCAEQGEQKDVKSIIFPSAGDDSEVMEGKTDGADLLAGAVNCVFDARHSEVCLESDFVTDLLVDYNQENEPEEIMRNADSLPRVVENCDALGGMDTNSCRQISPSLDVEVPSGVLYIDRKVESTSDILHDQKNGEDCDSTREEKIRTDVDEEITINSYVQANSSPNFQRILKTSPVVDSLCQPTLLDRGSKLKNGILKTEDNFCMSKDCSADVLANSTIRKPFYPESGQSSFVLITNSSPKDVPDLLCKGDGVSINNNCAVDNPGQTKNDGKEAVEVDCITESILLPSQRSSQRTKFGRKTQTRKSSRKSKNKASVTHPGGGMKINLEAARKRRSCLSKPARSSVWGLLGNIEQFIQHENELEVSEAMDQSEGKARNGHQGTKMIKNGASSSSLSSVQKHNVSTSTTRFRLKIKFGKENDLHCSNVLESVGGLASASYLGSDSGSQKVTNNSADKFSEVPALNNLESFRKDLDKDCVVVNEQIVNSQLENSKITEKSDGDAEEPCHTVPPERVVEELVKPINNSVIEPGTSPDSEVIDSIPEVQVGERHEDVHLAVLGSSNELNSNMDVTFGKREKKKDNLICSGNCITEDGSQGLLGNNIVKHSKNHRRKKNFKDVVSSLELPTSTELSKSVKSKELAAESLLRSGEVVLGVSTKALKVKSDVKVKPAGKTYGSHGFSEFQASQDLPSSTRPLGRKLPKSFEPIDVSTAKSKASDSTSRKKTTGRKEKQKEPINKSEVKGKCVSVKVTSEVEDHLRPADVVGNHKLDAVGKIDPSDNSVSVNVSNLDMQPGFGLGEQPQSPRNAWVSCDDCHKWRRIPALLADRIDETNCTWTCKDSSDKAFADCDIPQEKSNAEINAELGLSYASGEEDVCEDSKNYKELEYRLPSVSQESTFTRIFTNEFLHRNPKTQTIDEVMVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDRCSNQQFQKRSYSRLKWFKCGKKGYGLKALERVAKGHFIIEYVGEVLDMPAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRNIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVHGDSDDEYPEPMMLTEDGEIEDSTPMPFDNVDTESSRHVLTDRDVLDKSTTAIDEDGSPGKDSSVNPASAVSLLHSSVEVEDSKGNLPSNQLEEISQQMEDTTSKPMPAVSKVLSNSTDSRESKSEMVEGGNGVSQSHLHVKKTSKLNASVKKAKVSANAANGPTAEVAANRLPVSSIKHKKVIEGSSNGRFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRYTGEAIQSNRDLSMILDALLKTKSRAVLNDIISKNGLQMLHKIMKQYRQDFKKIPILRKLLKVLEYLAEGKVLTPEHINSGPPCRGMESFRRSMLSLTEHDDKQVHQIARSFRDRWIRRNGRKRGHMDRDDNRVESHRNFNRFSVSHNHRHEQGLRPKEEIDCGQQSMLVTTSVDGGSQDGCSTPSLDGVEINGVKKRKRKSRWDQPAETNSYYGAAVIGSTNESQIMNEELPPGFSCPVRSSNSALNSGSPALQNASHFGWPSSLVTGQPKEKFNSRLPVSYGMPWSVAQQYGTLHAEITGCWVTAPGMPFNPFPPLPPYPRDIQDCQPSNTNGMEIDQPAEVMQQDANGVINCCSESDNTTSTAGAKPEDTNLECEEYKHDTKRLKGNSNDLGKNYFRQQKWNNSKIHRTWFKRNAWKCNDNNSSGDMCSVDVGDVSKESKVTSYSEDAICRDEKGGK 2042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03591 2042 MobiDBLite consensus disorder prediction 1446 1490 - -
Trre5g03591 2042 SMART set_7 1198 1321 IPR001214 GO:0005515
Trre5g03591 2042 SMART PostSET_3 1323 1339 IPR003616 -
Trre5g03591 2042 MobiDBLite consensus disorder prediction 909 923 - -
Trre5g03591 2042 ProSiteProfiles Post-SET domain profile. 1323 1339 IPR003616 -
Trre5g03591 2042 MobiDBLite consensus disorder prediction 1385 1405 - -
Trre5g03591 2042 FunFam Histone-lysine N-methyltransferase 1097 1354 - -
Trre5g03591 2042 ProSiteProfiles Zinc finger CW-type profile. 1032 1086 IPR011124 GO:0008270
Trre5g03591 2042 SUPERFAMILY SET domain 1127 1336 IPR046341 -
Trre5g03591 2042 MobiDBLite consensus disorder prediction 907 972 - -
Trre5g03591 2042 FunFam Histone-lysine N-methyltransferase 1030 1091 - -
Trre5g03591 2042 ProSiteProfiles AWS domain profile. 1146 1196 IPR006560 GO:0005634|GO:0042054
Trre5g03591 2042 Gene3D SET domain 1094 1347 IPR046341 -
Trre5g03591 2042 PANTHER SET DOMAIN PROTEINS 539 1792 - -
Trre5g03591 2042 MobiDBLite consensus disorder prediction 615 633 - -
Trre5g03591 2042 MobiDBLite consensus disorder prediction 1367 1417 - -
Trre5g03591 2042 ProSiteProfiles SET domain profile. 1198 1315 IPR001214 GO:0005515
Trre5g03591 2042 MobiDBLite consensus disorder prediction 598 633 - -
Trre5g03591 2042 MobiDBLite consensus disorder prediction 522 559 - -
Trre5g03591 2042 Pfam AWS domain 1161 1195 IPR006560 GO:0005634|GO:0042054
Trre5g03591 2042 MobiDBLite consensus disorder prediction 529 544 - -
Trre5g03591 2042 MobiDBLite consensus disorder prediction 947 970 - -
Trre5g03591 2042 Gene3D - 1028 1091 - -
Trre5g03591 2042 MobiDBLite consensus disorder prediction 1446 1471 - -
Trre5g03591 2042 CDD SET_SETD2 1197 1339 IPR044437 GO:0010452|GO:0046975
Trre5g03591 2042 SMART shorttest3 1146 1197 IPR006560 GO:0005634|GO:0042054
Trre5g03591 2042 Pfam CW-type Zinc Finger 1038 1084 IPR011124 GO:0008270
Trre5g03591 2042 Pfam SET domain 1209 1315 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03591 Trre-Chr5 34323390 34335551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03591 1180 1339 Su(var)3-9 homologs AT1G73100 34.536 1.71e-19 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre5g03591 SET 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03591 - - mtr:25489708 2945.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03591 5 34323390 34335551 Trre5g03591 5 34323390 34335551 ECH