Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03585 ATGGGAAGAGGTAAGATTGAGATCAAAAGAATTGAAAACTCAAGCAACAGACAAGTTACTTATTCAAAGAGAAAGAATGGAATTCTTAAGAAAGCTAAGGAAATAAGTGTTCTCTGTGATGCTCAAGTTTCTCTTATTCTCTTTGGTGCTTCTGGAAAGATGCATGAATACATCAGTCCCTCCACCACGTTGATTGATGTTCTAGACAGATACCAGAGAGCATCTGGAAAAACTCTTTGGGATGCTAAGCATGAGAACCTTAGCAATGAAATTGATAGAATCAAAAAGGAGAATGACAGCATGCAGATTGAGCTCAGGCACTTGAAGGGGGAGGATATTACCTCACTGAATTACAAAGAGCTTATGACCCTTGAGGAAGCCCTTGAAAATGGACTTACGGGTGTCCGTGACAAAAAGAATGAAGTGCATAGGATGATCAAGAGAAATGGCAAGATTTTGGAGGATGAAAATAAGGAACTCAATTTCCTTCTTCAGCAACATATGGCACTGGAAGGCGTGGGAAACATGCATGGACAATGGATTTAA 546 0.3974 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLNYKELMTLEEALENGLTGVRDKKNEVHRMIKRNGKILEDENKELNFLLQQHMALEGVGNMHGQWI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03585 181 Coils Coil 153 173 - -
Trre5g03585 181 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g03585 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre5g03585 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Trre5g03585 181 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g03585 181 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Trre5g03585 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre5g03585 181 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Trre5g03585 181 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Trre5g03585 181 Coils Coil 77 111 - -
Trre5g03585 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre5g03585 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g03585 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g03585 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g03585 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03585 Trre-Chr5 34136584 34139478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03585 1 146 MADS-box Gene Family AT5G20240 68.493 6.30e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre5g03585 K-box 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03585 K09264 - gmx:100795861 341.273