LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g03548	ATGAGCTTCTTGAGGCCATCTGCGATGTACAATTTTGTGTTTACTTATCCTTCATGGCGATGGATGCCGTGTCAGAGTTTGGGGTTCCTTCGGTGGCCGGGTCTTGAAGGCTTCTTTAGACTTTTGGTGGTTTTCCTTCTTTGGTCTACCTTCTCTCAACTCTGCTACATACCTTCTTCTTCTATGTACCCTACCCTTCGTGTTGGCGATCGAATTATTATCGAAAAGGCTTCATATTACATCTGGAGTCCTGCTATACATGATATTGTAACATTTCGGGATCCAACGCAGCATTGCGAAGAGAACAACACAGATGTGATTTTTATTAAAAGAGTTGTTGCAAAAGAAGGTGACACTGTTGAGGTTCATCATGGAGGACTCTATGTCAATGGTGTCGCTCAAGAGGAGGATTTCCTGGAAGACCCACCGACATACACAACCAAATTAACTTATGTTCCAAAAGGCCATGTTTATGTGTTGGGGGATAATCGCAACAATAGCTATGATTCTCATGTATGGGGACCACTTCCTATGAAAAATATAGTTGGAAGATATGCCATGCGCTGTCACAGACCAGTAAATTGA	585	0.4256	MSFLRPSAMYNFVFTYPSWRWMPCQSLGFLRWPGLEGFFRLLVVFLLWSTFSQLCYIPSSSMYPTLRVGDRIIIEKASYYIWSPAIHDIVTFRDPTQHCEENNTDVIFIKRVVAKEGDTVEVHHGGLYVNGVAQEEDFLEDPPTYTTKLTYVPKGHVYVLGDNRNNSYDSHVWGPLPMKNIVGRYAMRCHRPVN	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g03548	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Trre5g03548	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	108	120	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Trre5g03548	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	152	171	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Trre5g03548	194	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016020
	Trre5g03548	194	Pfam	Signal peptidase, peptidase S26	38	187	IPR019533	GO:0004252\|GO:0006465
	Trre5g03548	194	SUPERFAMILY	LexA/Signal peptidase	51	188	IPR036286	-
	Trre5g03548	194	FunFam	Peptidase/ serine-type peptidase	59	189	-	-
	Trre5g03548	194	Gene3D	Umud Fragment, subunit A	59	191	-	-
	Trre5g03548	194	ProSitePatterns	Signal peptidases I signature 3.	157	170	IPR019758	GO:0004252\|GO:0016020
	Trre5g03548	194	CDD	S26_SPase_I	53	184	IPR019533	GO:0004252\|GO:0006465
	Trre5g03548	194	PANTHER	SIGNAL PEPTIDASE I	36	190	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Trre5g03548	194	NCBIfam	signal peptidase I	40	189	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g03548	Trre-Chr5	33164586	33167082	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g03548	62	189	MADS-box Gene Family	AT1G29960	31.783	3.10e-09	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g03548	K03100		-	gmx:100306121	320.857

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre5g03548	5	33164586	33167082	Trre5g03548	5	33164586	33167082	ECH