Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03546 ATGTCGAGCCATAATAATAATCGTCGTTCATCCTTTTCGTCTTCAACAACATCATCCATGGCGAAACGACACCCTCCGGTAACAGTCACCGCTTCAGAGAACAACGCCGGAAAAGTTCTAGCCTCTGCCAAGAAACGTCCTCCTCTTACCAACCTCACAAATCAAAATGGTCCCCGCAATTCATCATCTTTGGTAACTAAAGTTGCAAAGACAAAGAAGGAACCTTCACTGTGTAATTCTTCGAGCTCAGCGATTTCGGGCAACAAAAAACCTACTTTGTCGAATGTTAAATCGGCTACTGTTGTTTTTCCTAAGGCCATCACAACTAGTACTACTAGTTCTTCATTTTCTGAAAGAAATGGAGTTAGGAATGAAGTTGTTGTTCCATTGGTTGGTACTACTACTACTACTACTACTTTCAATGTACCTGTTTCGAGTAGTGTGGATTTATCGTCGCCTGGTAAATCGGATGGAATGTCGGTGTCTATGGACGAGACAATGTCGTCTTGTGATTCTTTTAAGAGTCCTGATATTGAATATGTGGATAATAGTGATGTTCCAGCTGTTGATTCAATTGAGAGGAAGACGTTTTGTAGTCTTAACATTTCTGATTCTAATTACCCAACAGGTAATATTTGTAGTAGAGATATTCTTGTTGAGTTGGAAAAGGGGGAGAAAATTGTTAATATTGATAATGATCATGTGGATCCTCAGCTTTGTGCATCTTTTGCTTGTGATATCTACAAACATTTGCGTGCATCTGAGGTGAAGAAAAGACCTTCAACAGACTTCATGGAGAAAATTCAGAAGGACATAAATCCCAGCATGCGTGCTATACTCATTGATTGGCTAGTGGAGGTTGCTGAAGAGTATAGACTTGTACCAGATACATTGTATTTGACAGTAAACTACATCGATCGATATCTTTCTGGGAATCCGATGAACAGACAACAATTACAATTACTTGGAGTTGCTTCTATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTATATAACTGATAACACATACTTCAAGGAAGAGGTTTTGCAAATGGAATCTACTGTCTTGAATTTTCTGAAATTCGAAATGACGGCCCCAACAATTAAATGCTTCTTGAGAAGATTTGTACGTGCAGCTCAAGGAGTTGATGAGGTCCCTTCACTACAACTAGAGTGCTTGACAAACTATATCGCGGAATTATCTCTATTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATCGCAGCTTCTTCAATTTTCCTGGCAAAATATATGCTTTTCCCTTCAATGAAACCATGGAATCCAACATTGCAGCATTACACTCAATACCAGCCTGCTGATTTGTGTGTTTGTGTAAAGGATATCCACCGCCTTTGTTGCAACAGCCCTAATTCTAATTTGCCTGCAATTAAGGAGAAATACAATCAGCACAAGTATAAATATGTGGCCAAGAAGTACTGTCCTCCTTCAATACCACAAGAATATTTCCAGAATTGA 1527 0.3923 MSSHNNNRRSSFSSSTTSSMAKRHPPVTVTASENNAGKVLASAKKRPPLTNLTNQNGPRNSSSLVTKVAKTKKEPSLCNSSSSAISGNKKPTLSNVKSATVVFPKAITTSTTSSSFSERNGVRNEVVVPLVGTTTTTTTFNVPVSSSVDLSSPGKSDGMSVSMDETMSSCDSFKSPDIEYVDNSDVPAVDSIERKTFCSLNISDSNYPTGNICSRDILVELEKGEKIVNIDNDHVDPQLCASFACDIYKHLRASEVKKRPSTDFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQQLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESTVLNFLKFEMTAPTIKCFLRRFVRAAQGVDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASSIFLAKYMLFPSMKPWNPTLQHYTQYQPADLCVCVKDIHRLCCNSPNSNLPAIKEKYNQHKYKYVAKKYCPPSIPQEYFQN 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03546 508 MobiDBLite consensus disorder prediction 1 37 - -
Trre5g03546 508 ProSitePatterns Cyclins signature. 277 308 IPR006671 -
Trre5g03546 508 SMART Cyclin_C_2 375 498 IPR004367 -
Trre5g03546 508 MobiDBLite consensus disorder prediction 1 91 - -
Trre5g03546 508 FunFam Cyclin A1 362 494 - -
Trre5g03546 508 CDD CYCLIN_AtCycA_like_rpt1 236 371 - -
Trre5g03546 508 Gene3D - 246 494 - -
Trre5g03546 508 SMART cyclin_7 282 366 IPR013763 -
Trre5g03546 508 SMART cyclin_7 379 467 IPR013763 -
Trre5g03546 508 FunFam Mitotic cyclin 6 260 360 - -
Trre5g03546 508 MobiDBLite consensus disorder prediction 47 91 - -
Trre5g03546 508 SUPERFAMILY Cyclin-like 236 372 IPR036915 -
Trre5g03546 508 MobiDBLite consensus disorder prediction 146 166 - -
Trre5g03546 508 Gene3D - 260 373 - -
Trre5g03546 508 PIRSF Cyclin_A_B_D_E 4 505 IPR046965 GO:0016538|GO:0044772
Trre5g03546 508 Pfam Cyclin, N-terminal domain 246 372 IPR006671 -
Trre5g03546 508 PANTHER CYCLINS 180 485 IPR039361 -
Trre5g03546 508 SUPERFAMILY Cyclin-like 375 500 IPR036915 -
Trre5g03546 508 CDD CYCLIN_AtCycA-like_rpt2 375 489 - -
Trre5g03546 508 Pfam Cyclin, C-terminal domain 375 494 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03546 Trre-Chr5 33141272 33144456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03546 1 508 Core Cell Cycle Gene Families AT1G44110 57.864 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03546 K06627 - gmx:100789565 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03546 5 33141272 33144456 Trre5g03546 5 33141272 33144456 ECH