Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03545 ATGTTCACACGTAGCCGACGCTTTCCTTCTTCTGATTCATCCTCCGAGAAGAAGAAATCATCATCCATTTCAGATAATCCAGTTTCAAGCAAAAAGGTCATCAATGCCGTCAAAACTCGCTTGACCAAGAAACGTCCCGCTCTTGCCGACGTAACCAATACCAGAAATGCCTCTCTTGGTAAATCCTCCTTTGGTGCTCCATCCAAACCCATGGTTCCGTGCATGTCCAAAACTACAAAGACAAAGAAGGATTCCATTGCCAGTTCGCAGAAAAATGTTATGTCTAGGAACATTTTGCAGCCCTCATTAAAATCAAGTGGATTATTGCGCTCCAACGAAGCATGTTCGACCAAAGTTTGTCAAACTAAGACTGGAGTTCAAGCTTTCGTTGCGCCAAGCAATGATGGTGCTGGTTGTCCTGATTTTAAGAACAAGGTCTGTGATCCGAGATGGATGAACATTTCTCCAAGTAATTCATTTAGTGGTTCTGTTTCACTGGATGAGAGCATGTCAACCAACAATTCTTTGATGACTCCGGAGTTAGAATATATTTGCAATGATGATGTTATATTGACCAAATCAATTGAGAATAAAACTTGCAGCATTCTCAATATTTCAGACTCTTCCAAAATGGCAGGGAGAATACAGGATGTTGACACCATACTGAAGTCAAGTGCAAATGAGATTGTAGACATTGACTGCAATATCAAAGACCCACAGTTTTGTGCATCCATTGCCCATGAAATCTATGAAAATTTGCGTGCATCTGAGAAAAGTAAAATGCCATCTAAGAACTTCATGGAGAAGATACAGAAAGACATAAATGCTGGCATGCGGGCAATGCTTATTGATTGGCTTGTGGAGGTTGCCGAAGAGTACAGACTTCTACCTGATACAATATTTTTGGCAGTTAACTACCTTGATCGCTATCTTTCAGGCAAAGCAATGAACAGACAGAGGTTACAACTACTTGGTGTTTCCTGCATGATGATTGCTGCTAAATACGAGGAGATCTGTGCCCCCAAGGCGGAAGAGTTCTGTTATATAACCGATAATACGTATTCTAAGGAGCAGGTGTTGGACATGGAGTCCTCTGTGCTGAATTTCTTGAAGTTTGAAATGACGGCTCCTACAACTAGATGTTTTTTGAGACGCTTCATTATTGTTGTCCAAAAAACATGTGAGGTTCTATTGATGCAGTTGGAGTATTTGGCTGACTATCTAGCAGAGTTGTCGCTTCTAGAGTATGATATGCTTAAGTATACACCGTCATTAATAGCTGCTTCAGCCGCTTTCTTGGCTAAATATATACTACTTCCTAGGAAGAAACCTTGGAACTCTATGCTGTGGCATTACACAGGTTATCAAGCATCAGAATTGCGTGAATGTGTTAAGGGATTGCATCTGTTGTACTGCAATGGCTATCAGAATTCACCTTCCATTACTGCTATCAAAGAAAAATACAGTCAGCATAAGTTCAAGTTTGTGGCGAAGAAGTATTGTTCTCCATCAATACCAGTAGAAGTATTTCACAACTGA 1539 0.4061 MFTRSRRFPSSDSSSEKKKSSSISDNPVSSKKVINAVKTRLTKKRPALADVTNTRNASLGKSSFGAPSKPMVPCMSKTTKTKKDSIASSQKNVMSRNILQPSLKSSGLLRSNEACSTKVCQTKTGVQAFVAPSNDGAGCPDFKNKVCDPRWMNISPSNSFSGSVSLDESMSTNNSLMTPELEYICNDDVILTKSIENKTCSILNISDSSKMAGRIQDVDTILKSSANEIVDIDCNIKDPQFCASIAHEIYENLRASEKSKMPSKNFMEKIQKDINAGMRAMLIDWLVEVAEEYRLLPDTIFLAVNYLDRYLSGKAMNRQRLQLLGVSCMMIAAKYEEICAPKAEEFCYITDNTYSKEQVLDMESSVLNFLKFEMTAPTTRCFLRRFIIVVQKTCEVLLMQLEYLADYLAELSLLEYDMLKYTPSLIAASAAFLAKYILLPRKKPWNSMLWHYTGYQASELRECVKGLHLLYCNGYQNSPSITAIKEKYSQHKFKFVAKKYCSPSIPVEVFHN 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03545 512 SUPERFAMILY Cyclin-like 377 502 IPR036915 -
Trre5g03545 512 Gene3D - 262 375 - -
Trre5g03545 512 MobiDBLite consensus disorder prediction 59 91 - -
Trre5g03545 512 MobiDBLite consensus disorder prediction 74 91 - -
Trre5g03545 512 SUPERFAMILY Cyclin-like 237 374 IPR036915 -
Trre5g03545 512 FunFam Mitotic cyclin 6 262 362 - -
Trre5g03545 512 PANTHER CYCLINS 194 490 IPR039361 -
Trre5g03545 512 Gene3D - 248 498 - -
Trre5g03545 512 MobiDBLite consensus disorder prediction 1 31 - -
Trre5g03545 512 FunFam Cyclin A1 364 498 - -
Trre5g03545 512 CDD CYCLIN_AtCycA-like_rpt2 377 493 - -
Trre5g03545 512 SMART cyclin_7 284 368 IPR013763 -
Trre5g03545 512 SMART cyclin_7 385 469 IPR013763 -
Trre5g03545 512 SMART Cyclin_C_2 377 502 IPR004367 -
Trre5g03545 512 Pfam Cyclin, N-terminal domain 248 374 IPR006671 -
Trre5g03545 512 ProSitePatterns Cyclins signature. 279 310 IPR006671 -
Trre5g03545 512 Pfam Cyclin, C-terminal domain 377 498 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03545 Trre-Chr5 33128497 33134229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03545 149 512 Core Cell Cycle Gene Families AT1G44110 58.583 1.48e-151 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03545 K06627 - jre:108999040 535.798